miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23351 5' -56 NC_005259.1 + 51556 0.66 0.734068
Target:  5'- uGCACgacguugggGCCaacgaUCCGGCAGCCGguGCCGAc -3'
miRNA:   3'- gCGUG---------UGG-----AGGCUGUUGGUgcUGGCU- -5'
23351 5' -56 NC_005259.1 + 27785 0.67 0.723805
Target:  5'- --aGCACCUCgCGGucauCGACCACGACgUGAu -3'
miRNA:   3'- gcgUGUGGAG-GCU----GUUGGUGCUG-GCU- -5'
23351 5' -56 NC_005259.1 + 28636 0.67 0.723805
Target:  5'- gGC-CACCggugCCGACAccGCCGaGGCCGc -3'
miRNA:   3'- gCGuGUGGa---GGCUGU--UGGUgCUGGCu -5'
23351 5' -56 NC_005259.1 + 25943 0.67 0.719675
Target:  5'- gCGCACGCCggugcccggcccgCCGACG-CCugcgaugaGACCGGg -3'
miRNA:   3'- -GCGUGUGGa------------GGCUGUuGGug------CUGGCU- -5'
23351 5' -56 NC_005259.1 + 56162 0.67 0.713456
Target:  5'- aGCACGuCCU-CGuuGGCCACGguGCCGAc -3'
miRNA:   3'- gCGUGU-GGAgGCugUUGGUGC--UGGCU- -5'
23351 5' -56 NC_005259.1 + 44829 0.67 0.713456
Target:  5'- aGCucCACgagaUCCGAC-ACCGCGcCCGAg -3'
miRNA:   3'- gCGu-GUGg---AGGCUGuUGGUGCuGGCU- -5'
23351 5' -56 NC_005259.1 + 37147 0.67 0.703033
Target:  5'- uGCGCGCauagCCGuCAccGCCGCGcccGCCGAc -3'
miRNA:   3'- gCGUGUGga--GGCuGU--UGGUGC---UGGCU- -5'
23351 5' -56 NC_005259.1 + 52183 0.67 0.692544
Target:  5'- aGCAgGaCCgcgCCGACAACgCACGGCUc- -3'
miRNA:   3'- gCGUgU-GGa--GGCUGUUG-GUGCUGGcu -5'
23351 5' -56 NC_005259.1 + 3001 0.67 0.692544
Target:  5'- uGCGCGCCgCCGAC-GCCAUcACCc- -3'
miRNA:   3'- gCGUGUGGaGGCUGuUGGUGcUGGcu -5'
23351 5' -56 NC_005259.1 + 12347 0.67 0.692544
Target:  5'- nGC-CGCCUcgaaaCCGGCc-UCGCGACCGAg -3'
miRNA:   3'- gCGuGUGGA-----GGCUGuuGGUGCUGGCU- -5'
23351 5' -56 NC_005259.1 + 20245 0.67 0.692544
Target:  5'- cCGCAC-CCUgugCGACAcGCCGCGccggGCCGAu -3'
miRNA:   3'- -GCGUGuGGAg--GCUGU-UGGUGC----UGGCU- -5'
23351 5' -56 NC_005259.1 + 28798 0.67 0.692544
Target:  5'- uCGCuACGCCaUCGAC-ACCACGAUCc- -3'
miRNA:   3'- -GCG-UGUGGaGGCUGuUGGUGCUGGcu -5'
23351 5' -56 NC_005259.1 + 22656 0.67 0.692544
Target:  5'- cCGCcCACCacaucgCCGACGcacugACCGCcGCCGAu -3'
miRNA:   3'- -GCGuGUGGa-----GGCUGU-----UGGUGcUGGCU- -5'
23351 5' -56 NC_005259.1 + 28028 0.67 0.692544
Target:  5'- uGCGCGCgUUgGcCAGCCACGGCUu- -3'
miRNA:   3'- gCGUGUGgAGgCuGUUGGUGCUGGcu -5'
23351 5' -56 NC_005259.1 + 44526 0.68 0.671412
Target:  5'- aCGC-CGCCgcCCGGCAGuCCACucauGCCGAg -3'
miRNA:   3'- -GCGuGUGGa-GGCUGUU-GGUGc---UGGCU- -5'
23351 5' -56 NC_005259.1 + 47000 0.68 0.671412
Target:  5'- gGUGCGCCaCgCGAggaagcCGACCACGACCGc -3'
miRNA:   3'- gCGUGUGGaG-GCU------GUUGGUGCUGGCu -5'
23351 5' -56 NC_005259.1 + 23465 0.68 0.668228
Target:  5'- uCGCACgggGCCUcggcauugucggugCCGAC-GCCAUGACCa- -3'
miRNA:   3'- -GCGUG---UGGA--------------GGCUGuUGGUGCUGGcu -5'
23351 5' -56 NC_005259.1 + 17767 0.68 0.668228
Target:  5'- cCGCGCGCCgggCCGAgCGcaccgagcgugcgcACCGCGAUagCGAg -3'
miRNA:   3'- -GCGUGUGGa--GGCU-GU--------------UGGUGCUG--GCU- -5'
23351 5' -56 NC_005259.1 + 44736 0.68 0.660789
Target:  5'- aGCGCGCC-CU--CGACCGCG-CCGAg -3'
miRNA:   3'- gCGUGUGGaGGcuGUUGGUGCuGGCU- -5'
23351 5' -56 NC_005259.1 + 24075 0.68 0.660789
Target:  5'- uCGUGCACCgcgagaucaCCGGCAggGCCaACGaACCGAu -3'
miRNA:   3'- -GCGUGUGGa--------GGCUGU--UGG-UGC-UGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.