Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23353 | 5' | -55.5 | NC_005259.1 | + | 34105 | 0.79 | 0.181083 |
Target: 5'- --aCAUCGAGAaCgUGUCGCCGGGCGc -3' miRNA: 3'- guaGUAGCUCUaGgGCAGCGGCCUGC- -5' |
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23353 | 5' | -55.5 | NC_005259.1 | + | 7052 | 0.76 | 0.259126 |
Target: 5'- uCGUUgcgCGAGAUCCUGUCGaCGGGCGg -3' miRNA: 3'- -GUAGua-GCUCUAGGGCAGCgGCCUGC- -5' |
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23353 | 5' | -55.5 | NC_005259.1 | + | 60351 | 0.74 | 0.362556 |
Target: 5'- gAUCAggUCGAGGcccugcccgaaaUCCCGccaaUCGCCGGACa -3' miRNA: 3'- gUAGU--AGCUCU------------AGGGC----AGCGGCCUGc -5' |
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23353 | 5' | -55.5 | NC_005259.1 | + | 44965 | 0.73 | 0.405846 |
Target: 5'- gGUCAUCGGGAUgCCGaggGCCGGuGCGa -3' miRNA: 3'- gUAGUAGCUCUAgGGCag-CGGCC-UGC- -5' |
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23353 | 5' | -55.5 | NC_005259.1 | + | 68856 | 0.72 | 0.424049 |
Target: 5'- cCAUCAugUCGAcuugCCCG-CGCCGGGCGc -3' miRNA: 3'- -GUAGU--AGCUcua-GGGCaGCGGCCUGC- -5' |
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23353 | 5' | -55.5 | NC_005259.1 | + | 58914 | 0.71 | 0.481437 |
Target: 5'- -cUCGUCGGcGGUCuuGUCGUCGG-CGg -3' miRNA: 3'- guAGUAGCU-CUAGggCAGCGGCCuGC- -5' |
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23353 | 5' | -55.5 | NC_005259.1 | + | 46509 | 0.7 | 0.531987 |
Target: 5'- -cUCGUCGuacGAUCCCGcgaGCCGGuCGg -3' miRNA: 3'- guAGUAGCu--CUAGGGCag-CGGCCuGC- -5' |
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23353 | 5' | -55.5 | NC_005259.1 | + | 18721 | 0.7 | 0.552751 |
Target: 5'- gAUCAUCGGGccgCCCGgcaucgguaagUCGUCGGugGu -3' miRNA: 3'- gUAGUAGCUCua-GGGC-----------AGCGGCCugC- -5' |
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23353 | 5' | -55.5 | NC_005259.1 | + | 46539 | 0.7 | 0.552751 |
Target: 5'- gAUCGcCGAGAUCUgGUCGCCGaccGCGc -3' miRNA: 3'- gUAGUaGCUCUAGGgCAGCGGCc--UGC- -5' |
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23353 | 5' | -55.5 | NC_005259.1 | + | 61529 | 0.69 | 0.60557 |
Target: 5'- -cUCGUCGGGAauuUCCuCGUC-UCGGGCGa -3' miRNA: 3'- guAGUAGCUCU---AGG-GCAGcGGCCUGC- -5' |
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23353 | 5' | -55.5 | NC_005259.1 | + | 49213 | 0.69 | 0.61623 |
Target: 5'- cCGUUGUgCGGGGUuuaCUCGUCGUCGGACu -3' miRNA: 3'- -GUAGUA-GCUCUA---GGGCAGCGGCCUGc -5' |
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23353 | 5' | -55.5 | NC_005259.1 | + | 26389 | 0.69 | 0.626903 |
Target: 5'- uGUUGcUCGcGAUUCCGaCGCCGGGCGc -3' miRNA: 3'- gUAGU-AGCuCUAGGGCaGCGGCCUGC- -5' |
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23353 | 5' | -55.5 | NC_005259.1 | + | 66248 | 0.69 | 0.635446 |
Target: 5'- --cCAUCGAcgcagcgcggCCCG-CGCCGGGCGg -3' miRNA: 3'- guaGUAGCUcua-------GGGCaGCGGCCUGC- -5' |
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23353 | 5' | -55.5 | NC_005259.1 | + | 3264 | 0.68 | 0.68438 |
Target: 5'- gCAUCcugcUCGGGugguuUCCCGUCGCCGccucgccggucccucGGCGa -3' miRNA: 3'- -GUAGu---AGCUCu----AGGGCAGCGGC---------------CUGC- -5' |
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23353 | 5' | -55.5 | NC_005259.1 | + | 23704 | 0.67 | 0.711659 |
Target: 5'- aCcgCGUCGuGAUCg---CGCCGGACGg -3' miRNA: 3'- -GuaGUAGCuCUAGggcaGCGGCCUGC- -5' |
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23353 | 5' | -55.5 | NC_005259.1 | + | 32666 | 0.67 | 0.711659 |
Target: 5'- aAUCGUCGGcAUCCgacucgcaauCGUCguaGCCGGGCGg -3' miRNA: 3'- gUAGUAGCUcUAGG----------GCAG---CGGCCUGC- -5' |
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23353 | 5' | -55.5 | NC_005259.1 | + | 47275 | 0.67 | 0.722029 |
Target: 5'- cCAgcgCAcCGAGcagacCgCCGUCGCCGGACa -3' miRNA: 3'- -GUa--GUaGCUCua---G-GGCAGCGGCCUGc -5' |
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23353 | 5' | -55.5 | NC_005259.1 | + | 44778 | 0.67 | 0.742506 |
Target: 5'- gCAUCggcgGUCGAGAaCagaCGcUCGCCGGugGc -3' miRNA: 3'- -GUAG----UAGCUCUaGg--GC-AGCGGCCugC- -5' |
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23353 | 5' | -55.5 | NC_005259.1 | + | 8073 | 0.67 | 0.752591 |
Target: 5'- --aCAUCGAGAUCgugCCG-CGCUGG-CGu -3' miRNA: 3'- guaGUAGCUCUAG---GGCaGCGGCCuGC- -5' |
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23353 | 5' | -55.5 | NC_005259.1 | + | 57226 | 0.67 | 0.752591 |
Target: 5'- gGUUGUCGGGGUCggagauccacgUCGUUGCCGGGa- -3' miRNA: 3'- gUAGUAGCUCUAG-----------GGCAGCGGCCUgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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