Results 21 - 40 of 65 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 58560 | 0.69 | 0.248576 |
Target: 5'- --gGCUCG-GGCGGUugGGCCGgauCGCgGCg -3' miRNA: 3'- cugCGAGCgCCGCCA--CCGGU---GCGgCG- -5' |
|||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 64759 | 0.69 | 0.242669 |
Target: 5'- cGCGcCUCGCGaCGGUgcgccucggcGGCC-CGCUGCg -3' miRNA: 3'- cUGC-GAGCGCcGCCA----------CCGGuGCGGCG- -5' |
|||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 8539 | 0.69 | 0.23688 |
Target: 5'- cGGCGaugagCuCGGCGGUGuaGCCcauGCGCCGCa -3' miRNA: 3'- -CUGCga---GcGCCGCCAC--CGG---UGCGGCG- -5' |
|||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 18772 | 0.69 | 0.231207 |
Target: 5'- -cUGCcacaUCGCGgugggcaaGCGGUGGCagggACGCCGCa -3' miRNA: 3'- cuGCG----AGCGC--------CGCCACCGg---UGCGGCG- -5' |
|||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 54023 | 0.69 | 0.225649 |
Target: 5'- cGACGCUCGgGcGCGGUgcGGUCuGCGaaGCa -3' miRNA: 3'- -CUGCGAGCgC-CGCCA--CCGG-UGCggCG- -5' |
|||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 47946 | 0.69 | 0.225649 |
Target: 5'- cGAUGa---CGGCGGUGccgauggccGCCGCGCCGCc -3' miRNA: 3'- -CUGCgagcGCCGCCAC---------CGGUGCGGCG- -5' |
|||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 46563 | 0.69 | 0.220205 |
Target: 5'- cGCGCcuauggUCGCGGCGucgaCCGCGCCGCc -3' miRNA: 3'- cUGCG------AGCGCCGCcaccGGUGCGGCG- -5' |
|||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 18349 | 0.68 | 0.293284 |
Target: 5'- cGACGC-CGaCGGCGacauGUGGCaCAUGCC-Cg -3' miRNA: 3'- -CUGCGaGC-GCCGC----CACCG-GUGCGGcG- -5' |
|||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 55329 | 0.68 | 0.293284 |
Target: 5'- gGugGUcuUgGCGGCagcGGUGGCgAUGCCGa -3' miRNA: 3'- -CugCG--AgCGCCG---CCACCGgUGCGGCg -5' |
|||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 1554 | 0.68 | 0.286531 |
Target: 5'- cGCGUUCGgGGCGGUG---ACGCUGUg -3' miRNA: 3'- cUGCGAGCgCCGCCACcggUGCGGCG- -5' |
|||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 62748 | 0.68 | 0.285863 |
Target: 5'- cGGCaGUaCGCGGUGGUacucgugGGCCggaACGUCGCg -3' miRNA: 3'- -CUG-CGaGCGCCGCCA-------CCGG---UGCGGCG- -5' |
|||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 13447 | 0.68 | 0.279901 |
Target: 5'- aGGCGUgaccgucggCGCGGCGcUGGugcucaCCGCGCUGCc -3' miRNA: 3'- -CUGCGa--------GCGCCGCcACC------GGUGCGGCG- -5' |
|||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 42199 | 0.68 | 0.273394 |
Target: 5'- cGCGCcgUCGCGaUGGaUGcccGCCGCGCCGCc -3' miRNA: 3'- cUGCG--AGCGCcGCC-AC---CGGUGCGGCG- -5' |
|||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 50159 | 0.68 | 0.273394 |
Target: 5'- cGGCGCgugaGCGaGCGGUGGa-AUGcCCGCa -3' miRNA: 3'- -CUGCGag--CGC-CGCCACCggUGC-GGCG- -5' |
|||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 12994 | 0.68 | 0.273394 |
Target: 5'- -gUGCUCGCGuucGCacucGGCUACGCCGCc -3' miRNA: 3'- cuGCGAGCGC---CGcca-CCGGUGCGGCG- -5' |
|||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 7677 | 0.68 | 0.273394 |
Target: 5'- -cCGcCUCGUGG-GGUGGCCcguACGuCUGCa -3' miRNA: 3'- cuGC-GAGCGCCgCCACCGG---UGC-GGCG- -5' |
|||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 10649 | 0.68 | 0.267009 |
Target: 5'- uGGC-CUCGCGGUcgagcgccuugaGGaUGGUCuGCGCCGCc -3' miRNA: 3'- -CUGcGAGCGCCG------------CC-ACCGG-UGCGGCG- -5' |
|||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 57459 | 0.68 | 0.260744 |
Target: 5'- cGACGCU-GCGGCaggccGGUGGCaccggaCACGUCGa -3' miRNA: 3'- -CUGCGAgCGCCG-----CCACCG------GUGCGGCg -5' |
|||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 11415 | 0.67 | 0.307161 |
Target: 5'- --gGCUCGUGGcCGGUGcaacggggauGCUugGgCCGCu -3' miRNA: 3'- cugCGAGCGCC-GCCAC----------CGGugC-GGCG- -5' |
|||||||
23354 | 3' | -63.8 | NC_005259.1 | + | 26994 | 0.67 | 0.307161 |
Target: 5'- aGACGUUCGaCGuuuCGGUcuugaacGCCGCGCCGUa -3' miRNA: 3'- -CUGCGAGC-GCc--GCCAc------CGGUGCGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home