miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23354 3' -63.8 NC_005259.1 + 56798 0.67 0.328908
Target:  5'- cGAUGaacagaUCGgGGuCGGUGGCCACccauuGCgCGCc -3'
miRNA:   3'- -CUGCg-----AGCgCC-GCCACCGGUG-----CG-GCG- -5'
23354 3' -63.8 NC_005259.1 + 35598 0.67 0.328908
Target:  5'- --aGgUCGgGuGCGuccUGGCCACGCUGCg -3'
miRNA:   3'- cugCgAGCgC-CGCc--ACCGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 45312 0.67 0.314286
Target:  5'- uGACGC-CGaGGCcgccgccgaacuGcGUGGCCuGCGCCGCc -3'
miRNA:   3'- -CUGCGaGCgCCG------------C-CACCGG-UGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 62920 0.67 0.307161
Target:  5'- uACGCUCGUccuCGGUuugcGGCuCGCGCUGCu -3'
miRNA:   3'- cUGCGAGCGcc-GCCA----CCG-GUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 11415 0.67 0.307161
Target:  5'- --gGCUCGUGGcCGGUGcaacggggauGCUugGgCCGCu -3'
miRNA:   3'- cugCGAGCGCC-GCCAC----------CGGugC-GGCG- -5'
23354 3' -63.8 NC_005259.1 + 26994 0.67 0.307161
Target:  5'- aGACGUUCGaCGuuuCGGUcuugaacGCCGCGCCGUa -3'
miRNA:   3'- -CUGCGAGC-GCc--GCCAc------CGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 58778 0.67 0.298775
Target:  5'- gGGCGCUgugCGCcggucgaGGCGGUgauugccucggcgGGCuCGCGCUGCu -3'
miRNA:   3'- -CUGCGA---GCG-------CCGCCA-------------CCG-GUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 18349 0.68 0.293284
Target:  5'- cGACGC-CGaCGGCGacauGUGGCaCAUGCC-Cg -3'
miRNA:   3'- -CUGCGaGC-GCCGC----CACCG-GUGCGGcG- -5'
23354 3' -63.8 NC_005259.1 + 55329 0.68 0.293284
Target:  5'- gGugGUcuUgGCGGCagcGGUGGCgAUGCCGa -3'
miRNA:   3'- -CugCG--AgCGCCG---CCACCGgUGCGGCg -5'
23354 3' -63.8 NC_005259.1 + 1554 0.68 0.286531
Target:  5'- cGCGUUCGgGGCGGUG---ACGCUGUg -3'
miRNA:   3'- cUGCGAGCgCCGCCACcggUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 62748 0.68 0.285863
Target:  5'- cGGCaGUaCGCGGUGGUacucgugGGCCggaACGUCGCg -3'
miRNA:   3'- -CUG-CGaGCGCCGCCA-------CCGG---UGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 13447 0.68 0.279901
Target:  5'- aGGCGUgaccgucggCGCGGCGcUGGugcucaCCGCGCUGCc -3'
miRNA:   3'- -CUGCGa--------GCGCCGCcACC------GGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 12994 0.68 0.273394
Target:  5'- -gUGCUCGCGuucGCacucGGCUACGCCGCc -3'
miRNA:   3'- cuGCGAGCGC---CGcca-CCGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 42199 0.68 0.273394
Target:  5'- cGCGCcgUCGCGaUGGaUGcccGCCGCGCCGCc -3'
miRNA:   3'- cUGCG--AGCGCcGCC-AC---CGGUGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 50159 0.68 0.273394
Target:  5'- cGGCGCgugaGCGaGCGGUGGa-AUGcCCGCa -3'
miRNA:   3'- -CUGCGag--CGC-CGCCACCggUGC-GGCG- -5'
23354 3' -63.8 NC_005259.1 + 7677 0.68 0.273394
Target:  5'- -cCGcCUCGUGG-GGUGGCCcguACGuCUGCa -3'
miRNA:   3'- cuGC-GAGCGCCgCCACCGG---UGC-GGCG- -5'
23354 3' -63.8 NC_005259.1 + 10649 0.68 0.267009
Target:  5'- uGGC-CUCGCGGUcgagcgccuugaGGaUGGUCuGCGCCGCc -3'
miRNA:   3'- -CUGcGAGCGCCG------------CC-ACCGG-UGCGGCG- -5'
23354 3' -63.8 NC_005259.1 + 57459 0.68 0.260744
Target:  5'- cGACGCU-GCGGCaggccGGUGGCaccggaCACGUCGa -3'
miRNA:   3'- -CUGCGAgCGCCG-----CCACCG------GUGCGGCg -5'
23354 3' -63.8 NC_005259.1 + 58560 0.69 0.248576
Target:  5'- --gGCUCG-GGCGGUugGGCCGgauCGCgGCg -3'
miRNA:   3'- cugCGAGCgCCGCCA--CCGGU---GCGgCG- -5'
23354 3' -63.8 NC_005259.1 + 64759 0.69 0.242669
Target:  5'- cGCGcCUCGCGaCGGUgcgccucggcGGCC-CGCUGCg -3'
miRNA:   3'- cUGC-GAGCGCcGCCA----------CCGGuGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.