miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23355 3' -54.9 NC_005259.1 + 18859 0.66 0.803306
Target:  5'- uGCCGugcAACGGuUGCGCGcGUGGGaggccaaccacgaugUCGAc -3'
miRNA:   3'- uCGGC---UUGCU-ACGCGCuCACCU---------------AGCU- -5'
23355 3' -54.9 NC_005259.1 + 14147 0.66 0.780249
Target:  5'- uGCCuguGCGA-GCGCGucguGUGGAUCu- -3'
miRNA:   3'- uCGGcu-UGCUaCGCGCu---CACCUAGcu -5'
23355 3' -54.9 NC_005259.1 + 858 0.67 0.76839
Target:  5'- aGGCCGAguGCGAgcgUGCGCucaacgcaaGGAUCGAu -3'
miRNA:   3'- -UCGGCU--UGCU---ACGCGcuca-----CCUAGCU- -5'
23355 3' -54.9 NC_005259.1 + 65702 0.67 0.739994
Target:  5'- gGGCCGAguaggACGAgGUcacgcccaagGCGAGUugGGGUCGAc -3'
miRNA:   3'- -UCGGCU-----UGCUaCG----------CGCUCA--CCUAGCU- -5'
23355 3' -54.9 NC_005259.1 + 36301 0.68 0.70866
Target:  5'- gAGCgCGAGCGcuUGgGCGGGcgGGAUCa- -3'
miRNA:   3'- -UCG-GCUUGCu-ACgCGCUCa-CCUAGcu -5'
23355 3' -54.9 NC_005259.1 + 27909 0.7 0.590297
Target:  5'- cGCCGAGacc-GCGCGGGUGGuagCGGu -3'
miRNA:   3'- uCGGCUUgcuaCGCGCUCACCua-GCU- -5'
23355 3' -54.9 NC_005259.1 + 26440 0.7 0.547635
Target:  5'- cGCCGAGCGG-GCGgGccGGUGGGcCGAu -3'
miRNA:   3'- uCGGCUUGCUaCGCgC--UCACCUaGCU- -5'
23355 3' -54.9 NC_005259.1 + 56184 0.71 0.52666
Target:  5'- uGCCGAcauacGCGuUGCGCGAGcugugcucaaGGAUCGGu -3'
miRNA:   3'- uCGGCU-----UGCuACGCGCUCa---------CCUAGCU- -5'
23355 3' -54.9 NC_005259.1 + 26572 0.72 0.475672
Target:  5'- cGCCGAgcACGAacuUGCGCGAG-GGGUUu- -3'
miRNA:   3'- uCGGCU--UGCU---ACGCGCUCaCCUAGcu -5'
23355 3' -54.9 NC_005259.1 + 44277 0.72 0.455968
Target:  5'- aGGCCGAACGccuuggccaGCGCGAGcGGGUUGc -3'
miRNA:   3'- -UCGGCUUGCua-------CGCGCUCaCCUAGCu -5'
23355 3' -54.9 NC_005259.1 + 6227 0.79 0.175278
Target:  5'- cGCCGAcaccgugACcGUGgGCGAGUGGGUCGAu -3'
miRNA:   3'- uCGGCU-------UGcUACgCGCUCACCUAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.