miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23355 5' -57.6 NC_005259.1 + 50093 0.67 0.580446
Target:  5'- uCGCCGAUGgugcgcccgaGGUUGCCcguACGCacgggCACCGc -3'
miRNA:   3'- -GUGGCUACa---------CCAGCGG---UGCGa----GUGGC- -5'
23355 5' -57.6 NC_005259.1 + 903 0.67 0.580446
Target:  5'- aCACCGAgGUGGU-GCCcgGCGaUCACCu -3'
miRNA:   3'- -GUGGCUaCACCAgCGG--UGCgAGUGGc -5'
23355 5' -57.6 NC_005259.1 + 53249 0.68 0.549125
Target:  5'- cCGCCGAcaccGUCGCCGcCGCugUCGCCGg -3'
miRNA:   3'- -GUGGCUacacCAGCGGU-GCG--AGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 15837 0.68 0.549125
Target:  5'- aGCuCGAUGUacGGcucgggcaUCGCCAaGCUCGCCGc -3'
miRNA:   3'- gUG-GCUACA--CC--------AGCGGUgCGAGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 2736 0.68 0.549125
Target:  5'- cCACCGAUGccgaGGUCGCCGuCGUgcaguacgacCACCu -3'
miRNA:   3'- -GUGGCUACa---CCAGCGGU-GCGa---------GUGGc -5'
23355 5' -57.6 NC_005259.1 + 16712 0.68 0.537768
Target:  5'- cCGCCGAgcaGGucgcgcucugccUCGCCACGCUCAagaucgcCCGg -3'
miRNA:   3'- -GUGGCUacaCC------------AGCGGUGCGAGU-------GGC- -5'
23355 5' -57.6 NC_005259.1 + 29106 0.68 0.532632
Target:  5'- aGCUGAUGcggacccugcUGGugagcgcggcgguauUCGCCuCGCUCACCGc -3'
miRNA:   3'- gUGGCUAC----------ACC---------------AGCGGuGCGAGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 39144 0.68 0.528537
Target:  5'- -cCCGAUGUGaUCGCCgACGUUgaaacCGCCGa -3'
miRNA:   3'- guGGCUACACcAGCGG-UGCGA-----GUGGC- -5'
23355 5' -57.6 NC_005259.1 + 28777 0.68 0.527515
Target:  5'- uGCCGAcgagGUacccgccGGUCGCUACGC-CAUCGa -3'
miRNA:   3'- gUGGCUa---CA-------CCAGCGGUGCGaGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 46929 0.68 0.518349
Target:  5'- cCGCCGAgcuUGccCGCCGCGC-CGCCGa -3'
miRNA:   3'- -GUGGCUac-ACcaGCGGUGCGaGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 54075 0.68 0.518349
Target:  5'- cCugCGugaggucgGUGG-CGUCGCGCaUCACCGg -3'
miRNA:   3'- -GugGCua------CACCaGCGGUGCG-AGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 53698 0.69 0.505224
Target:  5'- gACCGGUcaacgugaacGUGGUCaCCGCGCcgcugauggugaugUCGCCGg -3'
miRNA:   3'- gUGGCUA----------CACCAGcGGUGCG--------------AGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 41211 0.69 0.498217
Target:  5'- -gUCGGUGUGGaUCGUCACGCcCugCu -3'
miRNA:   3'- guGGCUACACC-AGCGGUGCGaGugGc -5'
23355 5' -57.6 NC_005259.1 + 37914 0.69 0.498217
Target:  5'- uUACCGAUGUaa-CGCCcacCGCUCACCc -3'
miRNA:   3'- -GUGGCUACAccaGCGGu--GCGAGUGGc -5'
23355 5' -57.6 NC_005259.1 + 32983 0.69 0.498217
Target:  5'- uGCCGAUGccgagGGUgcCGCCACGCccgaugucggCACCa -3'
miRNA:   3'- gUGGCUACa----CCA--GCGGUGCGa---------GUGGc -5'
23355 5' -57.6 NC_005259.1 + 8820 0.69 0.488282
Target:  5'- gCGCCGGgccgGUGaGUUGaCGCGCUgCGCCGa -3'
miRNA:   3'- -GUGGCUa---CAC-CAGCgGUGCGA-GUGGC- -5'
23355 5' -57.6 NC_005259.1 + 14297 0.69 0.47844
Target:  5'- cCACCGAUGUcGGUgcguauggcCGCCcucgACGC-CGCCGc -3'
miRNA:   3'- -GUGGCUACA-CCA---------GCGG----UGCGaGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 40634 0.69 0.47844
Target:  5'- aACuCGAUGccGUCGCCgagaaagucAUGCUCGCCGa -3'
miRNA:   3'- gUG-GCUACacCAGCGG---------UGCGAGUGGC- -5'
23355 5' -57.6 NC_005259.1 + 63387 0.69 0.462902
Target:  5'- uCGCCGAUGgcccacgccgaccaaUGGUUGCCcuUGCUCauGCCGa -3'
miRNA:   3'- -GUGGCUAC---------------ACCAGCGGu-GCGAG--UGGC- -5'
23355 5' -57.6 NC_005259.1 + 4510 0.69 0.459059
Target:  5'- gCGCCGGgaGUGG-CGCUGCGCggCACCc -3'
miRNA:   3'- -GUGGCUa-CACCaGCGGUGCGa-GUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.