miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23356 3' -54.5 NC_005259.1 + 45172 0.66 0.834691
Target:  5'- gGCcuUGUugCGCGccgaggucAGCGCGgugauGACGGGc -3'
miRNA:   3'- gCG--ACAugGCGU--------UCGCGCau---CUGCUC- -5'
23356 3' -54.5 NC_005259.1 + 64910 0.66 0.834691
Target:  5'- aGCg--ACgGCGAGCGUGaggauGACGAGu -3'
miRNA:   3'- gCGacaUGgCGUUCGCGCau---CUGCUC- -5'
23356 3' -54.5 NC_005259.1 + 16371 0.66 0.825792
Target:  5'- uGC-GUGCCGCu-GCGCc--GACGAGc -3'
miRNA:   3'- gCGaCAUGGCGuuCGCGcauCUGCUC- -5'
23356 3' -54.5 NC_005259.1 + 63838 0.66 0.816694
Target:  5'- gCGUUucGagGCAAGCGCGUAccGGCGAGg -3'
miRNA:   3'- -GCGAcaUggCGUUCGCGCAU--CUGCUC- -5'
23356 3' -54.5 NC_005259.1 + 12511 0.66 0.797939
Target:  5'- cCGCUGgGCCGCucGGCuaccCGUAGAgcCGAGc -3'
miRNA:   3'- -GCGACaUGGCGu-UCGc---GCAUCU--GCUC- -5'
23356 3' -54.5 NC_005259.1 + 45800 0.66 0.797939
Target:  5'- aCGgUGUcCUGCuugGGUGCGUAGcCGGGg -3'
miRNA:   3'- -GCgACAuGGCGu--UCGCGCAUCuGCUC- -5'
23356 3' -54.5 NC_005259.1 + 32549 0.67 0.768566
Target:  5'- uGCUGUugGCCGCcccggcGAGCGCGgGGAUa-- -3'
miRNA:   3'- gCGACA--UGGCG------UUCGCGCaUCUGcuc -5'
23356 3' -54.5 NC_005259.1 + 14145 0.68 0.731714
Target:  5'- ---aGUGCCuguGCGAGCGCGUcguguggaucucgccGGGCGGGu -3'
miRNA:   3'- gcgaCAUGG---CGUUCGCGCA---------------UCUGCUC- -5'
23356 3' -54.5 NC_005259.1 + 4612 0.68 0.695742
Target:  5'- aCGCUGUcggGCCGguGGCGCGaguucUGGAUa-- -3'
miRNA:   3'- -GCGACA---UGGCguUCGCGC-----AUCUGcuc -5'
23356 3' -54.5 NC_005259.1 + 67903 0.69 0.629732
Target:  5'- gGCUGUGggucUCGgcgagguCAAGCGCGUAGgucGCGAGg -3'
miRNA:   3'- gCGACAU----GGC-------GUUCGCGCAUC---UGCUC- -5'
23356 3' -54.5 NC_005259.1 + 67965 0.69 0.619946
Target:  5'- uGCUGUAgCGCGcgcAGCGgCGUGGccaccgccGCGAGc -3'
miRNA:   3'- gCGACAUgGCGU---UCGC-GCAUC--------UGCUC- -5'
23356 3' -54.5 NC_005259.1 + 12807 0.71 0.513164
Target:  5'- aCGCUGUcGCgCGCAcgcGCGCGUgagGGugGGGa -3'
miRNA:   3'- -GCGACA-UG-GCGUu--CGCGCA---UCugCUC- -5'
23356 3' -54.5 NC_005259.1 + 17187 0.73 0.424007
Target:  5'- gCGCaGgaaGCCGCGcgugaGGCGgGUAGACGGGa -3'
miRNA:   3'- -GCGaCa--UGGCGU-----UCGCgCAUCUGCUC- -5'
23356 3' -54.5 NC_005259.1 + 43165 0.73 0.424007
Target:  5'- uCGCUG-AUCGCAAGCGCGaAGuCGGu -3'
miRNA:   3'- -GCGACaUGGCGUUCGCGCaUCuGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.