Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23358 | 3' | -60.4 | NC_005259.1 | + | 10733 | 0.89 | 0.015549 |
Target: 5'- uGUCGGugauCACCGCGCGCUGCCGGGcgaUCa -3' miRNA: 3'- cCAGCCu---GUGGCGCGCGACGGCCU---AG- -5' |
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23358 | 3' | -60.4 | NC_005259.1 | + | 58573 | 0.75 | 0.136249 |
Target: 5'- gGGcCGGAuCGCgGCGCgGCUGCCGGGc- -3' miRNA: 3'- -CCaGCCU-GUGgCGCG-CGACGGCCUag -5' |
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23358 | 3' | -60.4 | NC_005259.1 | + | 63677 | 0.74 | 0.172166 |
Target: 5'- -cUCGGGCACCG-GCGC-GCCGGGg- -3' miRNA: 3'- ccAGCCUGUGGCgCGCGaCGGCCUag -5' |
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23358 | 3' | -60.4 | NC_005259.1 | + | 44326 | 0.74 | 0.176642 |
Target: 5'- uGUUGaGCGCCGCGUaGCUGCCGGGc- -3' miRNA: 3'- cCAGCcUGUGGCGCG-CGACGGCCUag -5' |
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23358 | 3' | -60.4 | NC_005259.1 | + | 17885 | 0.73 | 0.1951 |
Target: 5'- cGGUUGGacccccGCACCGCGCGCcgaugcguguggaUGCCcGGUCu -3' miRNA: 3'- -CCAGCC------UGUGGCGCGCG-------------ACGGcCUAG- -5' |
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23358 | 3' | -60.4 | NC_005259.1 | + | 6439 | 0.72 | 0.227343 |
Target: 5'- uGUCGG-CACCGuCGCGCUGaUCGGcagcGUCg -3' miRNA: 3'- cCAGCCuGUGGC-GCGCGAC-GGCC----UAG- -5' |
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23358 | 3' | -60.4 | NC_005259.1 | + | 52023 | 0.71 | 0.263346 |
Target: 5'- cGUCaGGccgccGCACUGCGCGCUGUCgccgucgaGGAUCg -3' miRNA: 3'- cCAG-CC-----UGUGGCGCGCGACGG--------CCUAG- -5' |
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23358 | 3' | -60.4 | NC_005259.1 | + | 31720 | 0.71 | 0.269778 |
Target: 5'- cGGUCuucucugaGGugACCGCGC-CUGCCGcGAg- -3' miRNA: 3'- -CCAG--------CCugUGGCGCGcGACGGC-CUag -5' |
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23358 | 3' | -60.4 | NC_005259.1 | + | 16799 | 0.7 | 0.311041 |
Target: 5'- cGGUCGcGuACAUCGCGCuCgggGCCgGGGUCa -3' miRNA: 3'- -CCAGC-C-UGUGGCGCGcGa--CGG-CCUAG- -5' |
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23358 | 3' | -60.4 | NC_005259.1 | + | 22209 | 0.7 | 0.333408 |
Target: 5'- cGUUGGcCACCGCGCaccgccgcgagGCUGUCGGuuuccGUCg -3' miRNA: 3'- cCAGCCuGUGGCGCG-----------CGACGGCC-----UAG- -5' |
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23358 | 3' | -60.4 | NC_005259.1 | + | 57234 | 0.7 | 0.333408 |
Target: 5'- gGGUCGGAgAuCCaCGuCGUUGCCGGGa- -3' miRNA: 3'- -CCAGCCUgU-GGcGC-GCGACGGCCUag -5' |
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23358 | 3' | -60.4 | NC_005259.1 | + | 44913 | 0.69 | 0.348962 |
Target: 5'- uGUgGGcCGCCGCauacGCGCUGaUCGGGUCc -3' miRNA: 3'- cCAgCCuGUGGCG----CGCGAC-GGCCUAG- -5' |
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23358 | 3' | -60.4 | NC_005259.1 | + | 9657 | 0.69 | 0.373248 |
Target: 5'- cGUCGGuauGC-CCGUuguuccacauGCGCUGCCGG-UCg -3' miRNA: 3'- cCAGCC---UGuGGCG----------CGCGACGGCCuAG- -5' |
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23358 | 3' | -60.4 | NC_005259.1 | + | 44160 | 0.68 | 0.390064 |
Target: 5'- cGGUCGaGCAgCGCGcCGgUGUCGGAg- -3' miRNA: 3'- -CCAGCcUGUgGCGC-GCgACGGCCUag -5' |
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23358 | 3' | -60.4 | NC_005259.1 | + | 67796 | 0.68 | 0.390064 |
Target: 5'- uGUUGG-CACCGCGUGCgagcuugaGCCcGAUCu -3' miRNA: 3'- cCAGCCuGUGGCGCGCGa-------CGGcCUAG- -5' |
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23358 | 3' | -60.4 | NC_005259.1 | + | 60775 | 0.68 | 0.398656 |
Target: 5'- aGGUUGGGCugCGCGaacagaucagcCGCguacacccgagGCCGGAaaUCg -3' miRNA: 3'- -CCAGCCUGugGCGC-----------GCGa----------CGGCCU--AG- -5' |
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23358 | 3' | -60.4 | NC_005259.1 | + | 11240 | 0.68 | 0.407369 |
Target: 5'- gGGcUCGGGCAUCGCGCGCaccacGUgGGcuUCg -3' miRNA: 3'- -CC-AGCCUGUGGCGCGCGa----CGgCCu-AG- -5' |
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23358 | 3' | -60.4 | NC_005259.1 | + | 68703 | 0.68 | 0.407369 |
Target: 5'- aGG-CGGGCAgCGCGuCGgUGCCcgagaacugGGGUCg -3' miRNA: 3'- -CCaGCCUGUgGCGC-GCgACGG---------CCUAG- -5' |
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23358 | 3' | -60.4 | NC_005259.1 | + | 53701 | 0.68 | 0.407369 |
Target: 5'- cGGUCaacgugaacguGGuCACCGCGcCGCUgauggugaugucGCCGGGUg -3' miRNA: 3'- -CCAG-----------CCuGUGGCGC-GCGA------------CGGCCUAg -5' |
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23358 | 3' | -60.4 | NC_005259.1 | + | 35634 | 0.68 | 0.416199 |
Target: 5'- -uUCGGGcCGCCGC-CGCUGCCGc--- -3' miRNA: 3'- ccAGCCU-GUGGCGcGCGACGGCcuag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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