miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23358 5' -58.2 NC_005259.1 + 6051 0.66 0.586322
Target:  5'- cCGA-CGAGCuCGUGuGCGCGGUGaucgccgcCGAAc -3'
miRNA:   3'- uGCUaGUUCG-GCAC-CGCGCCAC--------GCUU- -5'
23358 5' -58.2 NC_005259.1 + 50152 0.66 0.586322
Target:  5'- gGCGAUCcGGCgCGUGaGCgaGCGGUG-GAAu -3'
miRNA:   3'- -UGCUAGuUCG-GCAC-CG--CGCCACgCUU- -5'
23358 5' -58.2 NC_005259.1 + 58920 0.66 0.586322
Target:  5'- gGCGGUCuuGUCGUcggcgGGCGCGGUGgCa-- -3'
miRNA:   3'- -UGCUAGuuCGGCA-----CCGCGCCAC-Gcuu -5'
23358 5' -58.2 NC_005259.1 + 54751 0.67 0.557663
Target:  5'- aGCGAUCAGGCCGccgacccaaaccuUGcuuaugccugccacaGUGCGGUGcCGAc -3'
miRNA:   3'- -UGCUAGUUCGGC-------------AC---------------CGCGCCAC-GCUu -5'
23358 5' -58.2 NC_005259.1 + 8079 0.67 0.53357
Target:  5'- -aGAUCGuGCCGcgcUGGCGUGaccGUGCGAu -3'
miRNA:   3'- ugCUAGUuCGGC---ACCGCGC---CACGCUu -5'
23358 5' -58.2 NC_005259.1 + 54021 0.68 0.492619
Target:  5'- aGCGAc---GCuCG-GGCGCGGUGCGGu -3'
miRNA:   3'- -UGCUaguuCG-GCaCCGCGCCACGCUu -5'
23358 5' -58.2 NC_005259.1 + 33905 0.68 0.482604
Target:  5'- cGCGA-CGGGCCGagaccGGCcaCGGUGCGAGc -3'
miRNA:   3'- -UGCUaGUUCGGCa----CCGc-GCCACGCUU- -5'
23358 5' -58.2 NC_005259.1 + 11406 0.68 0.462878
Target:  5'- aGCGGUUucGGCuCGUGGC-CGGUGCa-- -3'
miRNA:   3'- -UGCUAGu-UCG-GCACCGcGCCACGcuu -5'
23358 5' -58.2 NC_005259.1 + 67916 0.69 0.410029
Target:  5'- gGCGAggUCAAGCgCGUaGGUcgcgaggaugaucuuGCGGUGCGGGu -3'
miRNA:   3'- -UGCU--AGUUCG-GCA-CCG---------------CGCCACGCUU- -5'
23358 5' -58.2 NC_005259.1 + 46985 0.7 0.346258
Target:  5'- gAUGAUCGGGCCGagGGUGCGccacGCGAGg -3'
miRNA:   3'- -UGCUAGUUCGGCa-CCGCGCca--CGCUU- -5'
23358 5' -58.2 NC_005259.1 + 58566 0.71 0.299995
Target:  5'- gGCGGUUggGCCGgaucgcGGCGCGGcUGcCGGg -3'
miRNA:   3'- -UGCUAGuuCGGCa-----CCGCGCC-AC-GCUu -5'
23358 5' -58.2 NC_005259.1 + 44962 0.72 0.26521
Target:  5'- uGCGGUCAucgggauGCCGagGGC-CGGUGCGAc -3'
miRNA:   3'- -UGCUAGUu------CGGCa-CCGcGCCACGCUu -5'
23358 5' -58.2 NC_005259.1 + 19196 0.74 0.216444
Target:  5'- uCGAcagCGAGCuCGUGGUGCGGgcgGCGAc -3'
miRNA:   3'- uGCUa--GUUCG-GCACCGCGCCa--CGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.