miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23359 5' -56.1 NC_005259.1 + 27991 0.66 0.708253
Target:  5'- --uUGGGUGGUGCGGgugccgGGGCgggGUCGCc -3'
miRNA:   3'- aguACCCGCCGUGCUa-----CUCG---UAGCGu -5'
23359 5' -56.1 NC_005259.1 + 40816 0.66 0.697601
Target:  5'- cUcgGGGuCGacgcGCACGAUGGGCcgCGUg -3'
miRNA:   3'- aGuaCCC-GC----CGUGCUACUCGuaGCGu -5'
23359 5' -56.1 NC_005259.1 + 59307 0.67 0.676122
Target:  5'- gUCGU-GGCGGCAgCGgcGAGCucagccUCGCGu -3'
miRNA:   3'- -AGUAcCCGCCGU-GCuaCUCGu-----AGCGU- -5'
23359 5' -56.1 NC_005259.1 + 28941 0.67 0.665315
Target:  5'- ----aGGCGGCACGAuccUGcgccGCAUCGCc -3'
miRNA:   3'- aguacCCGCCGUGCU---ACu---CGUAGCGu -5'
23359 5' -56.1 NC_005259.1 + 23304 0.67 0.654479
Target:  5'- aUcgGGGUccGGCGCGGUcGGUGUCGCc -3'
miRNA:   3'- aGuaCCCG--CCGUGCUAcUCGUAGCGu -5'
23359 5' -56.1 NC_005259.1 + 57017 0.67 0.654479
Target:  5'- cUCAgcgcGGCucGGCGCGGUGGG-GUCGCAc -3'
miRNA:   3'- -AGUac--CCG--CCGUGCUACUCgUAGCGU- -5'
23359 5' -56.1 NC_005259.1 + 42063 0.67 0.632757
Target:  5'- -gGUGGGCGGCua----GGUAUCGCAg -3'
miRNA:   3'- agUACCCGCCGugcuacUCGUAGCGU- -5'
23359 5' -56.1 NC_005259.1 + 56575 0.68 0.611031
Target:  5'- aUCGUc-GCGGCuGCGAUGAGCGccUCGUAu -3'
miRNA:   3'- -AGUAccCGCCG-UGCUACUCGU--AGCGU- -5'
23359 5' -56.1 NC_005259.1 + 1557 0.68 0.600191
Target:  5'- gUUcgGGGCGGUgACGcuGUGAGCG-CGCc -3'
miRNA:   3'- -AGuaCCCGCCG-UGC--UACUCGUaGCGu -5'
23359 5' -56.1 NC_005259.1 + 63883 0.68 0.564651
Target:  5'- gCGUGGGCGuggauuccauauccGCACGAgcGAGUcgagGUCGCGa -3'
miRNA:   3'- aGUACCCGC--------------CGUGCUa-CUCG----UAGCGU- -5'
23359 5' -56.1 NC_005259.1 + 23253 0.69 0.525501
Target:  5'- cUCGUGGGCGGUggccACcAUGAGCAccaagaccgggCGCGg -3'
miRNA:   3'- -AGUACCCGCCG----UGcUACUCGUa----------GCGU- -5'
23359 5' -56.1 NC_005259.1 + 58929 0.7 0.48439
Target:  5'- gUCGUcGGCgGGCGCGGUGgcAGCGUCGg- -3'
miRNA:   3'- -AGUAcCCG-CCGUGCUAC--UCGUAGCgu -5'
23359 5' -56.1 NC_005259.1 + 30426 0.72 0.346407
Target:  5'- aCGUGaGGCaGCGCGAUGAGcCGUgGCu -3'
miRNA:   3'- aGUAC-CCGcCGUGCUACUC-GUAgCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.