miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2336 3' -51.5 NC_001416.1 + 4683 0.76 0.323421
Target:  5'- gCUGGUCAGCcggacgcgggcgcuGCAGCCGUAcucgGGGAUGa -3'
miRNA:   3'- aGACCAGUCGu-------------CGUUGGCGU----UCUUAC- -5'
2336 3' -51.5 NC_001416.1 + 19335 0.7 0.628877
Target:  5'- -gUGGUcCGGCAGUAcaauggauuACCGUAAGAcgGa -3'
miRNA:   3'- agACCA-GUCGUCGU---------UGGCGUUCUuaC- -5'
2336 3' -51.5 NC_001416.1 + 9310 0.68 0.720517
Target:  5'- gCUgGGUCAGCAGUAuCgGUAAGGcgGu -3'
miRNA:   3'- aGA-CCAGUCGUCGUuGgCGUUCUuaC- -5'
2336 3' -51.5 NC_001416.1 + 9415 0.67 0.764425
Target:  5'- --cGGUaaCAGCGGCAACCgGCAuGAccGUGa -3'
miRNA:   3'- agaCCA--GUCGUCGUUGG-CGUuCU--UAC- -5'
2336 3' -51.5 NC_001416.1 + 37226 0.69 0.686523
Target:  5'- uUCUGGUCGGC-GCAuaGCUgauaacaauugaGCAAGAAUc -3'
miRNA:   3'- -AGACCAGUCGuCGU--UGG------------CGUUCUUAc -5'
2336 3' -51.5 NC_001416.1 + 8495 0.73 0.420336
Target:  5'- -gUGGUCAGCGGC-ACCGCcaucGGGAUu -3'
miRNA:   3'- agACCAGUCGUCGuUGGCGu---UCUUAc -5'
2336 3' -51.5 NC_001416.1 + 5994 1.09 0.001836
Target:  5'- gUCUGGUCAGCAGCAACCGCAAGAAUGc -3'
miRNA:   3'- -AGACCAGUCGUCGUUGGCGUUCUUAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.