miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23362 5' -60.3 NC_005259.1 + 29959 0.66 0.46088
Target:  5'- cGGCUG-GUGGGG-CGGGCGguGa-- -3'
miRNA:   3'- cCCGGCuCAUCCCuGUCCGCguCgau -5'
23362 5' -60.3 NC_005259.1 + 66193 0.66 0.470533
Target:  5'- -uGCCGgugcAGUAcGGGuCAGGCGCGGUc- -3'
miRNA:   3'- ccCGGC----UCAU-CCCuGUCCGCGUCGau -5'
23362 5' -60.3 NC_005259.1 + 5072 0.66 0.510118
Target:  5'- uGGGCCGGGUc--GACGGGC-CGGUg- -3'
miRNA:   3'- -CCCGGCUCAuccCUGUCCGcGUCGau -5'
23362 5' -60.3 NC_005259.1 + 13436 0.67 0.423362
Target:  5'- gGGGCCGcGcUAGGcGugAccgucGGCGCGGCg- -3'
miRNA:   3'- -CCCGGCuC-AUCC-CugU-----CCGCGUCGau -5'
23362 5' -60.3 NC_005259.1 + 61598 0.67 0.432571
Target:  5'- uGGGCCG-GUGGGGuC-GGCGgggaaCAGCa- -3'
miRNA:   3'- -CCCGGCuCAUCCCuGuCCGC-----GUCGau -5'
23362 5' -60.3 NC_005259.1 + 14561 0.68 0.344465
Target:  5'- aGGCCGAGcGGGGACcGGCGaacaccaucgcGCUGg -3'
miRNA:   3'- cCCGGCUCaUCCCUGuCCGCgu---------CGAU- -5'
23362 5' -60.3 NC_005259.1 + 65701 0.69 0.329545
Target:  5'- cGGGCCGAGUA-GGACgaggucacgcccaAGGCG-AGUUGg -3'
miRNA:   3'- -CCCGGCUCAUcCCUG-------------UCCGCgUCGAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.