Results 21 - 34 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23363 | 3' | -59.9 | NC_005259.1 | + | 31247 | 0.67 | 0.402369 |
Target: 5'- --gCGCGGCGGUgccgcCCCACACGCCg-- -3' miRNA: 3'- uagGUGCCGUCGu----GGGUGUGUGGgag -5' |
|||||||
23363 | 3' | -59.9 | NC_005259.1 | + | 43277 | 0.68 | 0.39261 |
Target: 5'- aGUUgACcGCAGCGCCCGCcgccgacGCGCCCg- -3' miRNA: 3'- -UAGgUGcCGUCGUGGGUG-------UGUGGGag -5' |
|||||||
23363 | 3' | -59.9 | NC_005259.1 | + | 34770 | 0.68 | 0.38474 |
Target: 5'- cGUCgGCGaGCAGCACUgcaaGCAgACUCUCg -3' miRNA: 3'- -UAGgUGC-CGUCGUGGg---UGUgUGGGAG- -5' |
|||||||
23363 | 3' | -59.9 | NC_005259.1 | + | 58810 | 0.69 | 0.34296 |
Target: 5'- cUCgGCGGgcucgcgcugcuCGGCACCCuCGcCGCCCUCg -3' miRNA: 3'- uAGgUGCC------------GUCGUGGGuGU-GUGGGAG- -5' |
|||||||
23363 | 3' | -59.9 | NC_005259.1 | + | 44703 | 0.7 | 0.275588 |
Target: 5'- -cCCGCGucccacccgaucuGCAacGCACCCggcaGCGCGCCCUCg -3' miRNA: 3'- uaGGUGC-------------CGU--CGUGGG----UGUGUGGGAG- -5' |
|||||||
23363 | 3' | -59.9 | NC_005259.1 | + | 8125 | 0.7 | 0.276268 |
Target: 5'- -gCCuaguCGGCuacgGGUGCCC-CGCGCCCUCg -3' miRNA: 3'- uaGGu---GCCG----UCGUGGGuGUGUGGGAG- -5' |
|||||||
23363 | 3' | -59.9 | NC_005259.1 | + | 51360 | 0.7 | 0.283137 |
Target: 5'- -gCC-CGGUGGCACCgGCACACCg-- -3' miRNA: 3'- uaGGuGCCGUCGUGGgUGUGUGGgag -5' |
|||||||
23363 | 3' | -59.9 | NC_005259.1 | + | 30578 | 0.7 | 0.297278 |
Target: 5'- -gCCGCaGUAGCGcuguuguccuCCCACACGCCCa- -3' miRNA: 3'- uaGGUGcCGUCGU----------GGGUGUGUGGGag -5' |
|||||||
23363 | 3' | -59.9 | NC_005259.1 | + | 67044 | 0.71 | 0.256461 |
Target: 5'- cUCgACGGCgAGCACCCGUGCGCCgauCUCa -3' miRNA: 3'- uAGgUGCCG-UCGUGGGUGUGUGG---GAG- -5' |
|||||||
23363 | 3' | -59.9 | NC_005259.1 | + | 51290 | 0.71 | 0.250122 |
Target: 5'- ---aGCGGCAGCGCCCG-ACAUCUUCc -3' miRNA: 3'- uaggUGCCGUCGUGGGUgUGUGGGAG- -5' |
|||||||
23363 | 3' | -59.9 | NC_005259.1 | + | 62563 | 0.71 | 0.250122 |
Target: 5'- -aCCG-GGCAGCGgCCACAUcagacgaccucGCCCUCg -3' miRNA: 3'- uaGGUgCCGUCGUgGGUGUG-----------UGGGAG- -5' |
|||||||
23363 | 3' | -59.9 | NC_005259.1 | + | 48056 | 0.72 | 0.193653 |
Target: 5'- -gCCACGGCggguAGCGCCgC-CGCGCCCUg -3' miRNA: 3'- uaGGUGCCG----UCGUGG-GuGUGUGGGAg -5' |
|||||||
23363 | 3' | -59.9 | NC_005259.1 | + | 37060 | 0.73 | 0.183792 |
Target: 5'- -cCCACGGCGGCGguguccacgUCCACGCACCg-- -3' miRNA: 3'- uaGGUGCCGUCGU---------GGGUGUGUGGgag -5' |
|||||||
23363 | 3' | -59.9 | NC_005259.1 | + | 34069 | 0.75 | 0.119757 |
Target: 5'- -aCCACGGCGGCGgugUCCACACguagGCCCUg -3' miRNA: 3'- uaGGUGCCGUCGU---GGGUGUG----UGGGAg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home