miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23363 3' -59.9 NC_005259.1 + 34069 0.75 0.119757
Target:  5'- -aCCACGGCGGCGgugUCCACACguagGCCCUg -3'
miRNA:   3'- uaGGUGCCGUCGU---GGGUGUG----UGGGAg -5'
23363 3' -59.9 NC_005259.1 + 37060 0.73 0.183792
Target:  5'- -cCCACGGCGGCGguguccacgUCCACGCACCg-- -3'
miRNA:   3'- uaGGUGCCGUCGU---------GGGUGUGUGGgag -5'
23363 3' -59.9 NC_005259.1 + 48056 0.72 0.193653
Target:  5'- -gCCACGGCggguAGCGCCgC-CGCGCCCUg -3'
miRNA:   3'- uaGGUGCCG----UCGUGG-GuGUGUGGGAg -5'
23363 3' -59.9 NC_005259.1 + 62563 0.71 0.250122
Target:  5'- -aCCG-GGCAGCGgCCACAUcagacgaccucGCCCUCg -3'
miRNA:   3'- uaGGUgCCGUCGUgGGUGUG-----------UGGGAG- -5'
23363 3' -59.9 NC_005259.1 + 51290 0.71 0.250122
Target:  5'- ---aGCGGCAGCGCCCG-ACAUCUUCc -3'
miRNA:   3'- uaggUGCCGUCGUGGGUgUGUGGGAG- -5'
23363 3' -59.9 NC_005259.1 + 67044 0.71 0.256461
Target:  5'- cUCgACGGCgAGCACCCGUGCGCCgauCUCa -3'
miRNA:   3'- uAGgUGCCG-UCGUGGGUGUGUGG---GAG- -5'
23363 3' -59.9 NC_005259.1 + 44703 0.7 0.275588
Target:  5'- -cCCGCGucccacccgaucuGCAacGCACCCggcaGCGCGCCCUCg -3'
miRNA:   3'- uaGGUGC-------------CGU--CGUGGG----UGUGUGGGAG- -5'
23363 3' -59.9 NC_005259.1 + 8125 0.7 0.276268
Target:  5'- -gCCuaguCGGCuacgGGUGCCC-CGCGCCCUCg -3'
miRNA:   3'- uaGGu---GCCG----UCGUGGGuGUGUGGGAG- -5'
23363 3' -59.9 NC_005259.1 + 51360 0.7 0.283137
Target:  5'- -gCC-CGGUGGCACCgGCACACCg-- -3'
miRNA:   3'- uaGGuGCCGUCGUGGgUGUGUGGgag -5'
23363 3' -59.9 NC_005259.1 + 30578 0.7 0.297278
Target:  5'- -gCCGCaGUAGCGcuguuguccuCCCACACGCCCa- -3'
miRNA:   3'- uaGGUGcCGUCGU----------GGGUGUGUGGGag -5'
23363 3' -59.9 NC_005259.1 + 58810 0.69 0.34296
Target:  5'- cUCgGCGGgcucgcgcugcuCGGCACCCuCGcCGCCCUCg -3'
miRNA:   3'- uAGgUGCC------------GUCGUGGGuGU-GUGGGAG- -5'
23363 3' -59.9 NC_005259.1 + 34770 0.68 0.38474
Target:  5'- cGUCgGCGaGCAGCACUgcaaGCAgACUCUCg -3'
miRNA:   3'- -UAGgUGC-CGUCGUGGg---UGUgUGGGAG- -5'
23363 3' -59.9 NC_005259.1 + 43277 0.68 0.39261
Target:  5'- aGUUgACcGCAGCGCCCGCcgccgacGCGCCCg- -3'
miRNA:   3'- -UAGgUGcCGUCGUGGGUG-------UGUGGGag -5'
23363 3' -59.9 NC_005259.1 + 31247 0.67 0.402369
Target:  5'- --gCGCGGCGGUgccgcCCCACACGCCg-- -3'
miRNA:   3'- uagGUGCCGUCGu----GGGUGUGUGGgag -5'
23363 3' -59.9 NC_005259.1 + 41122 0.67 0.402369
Target:  5'- -aUguCGGCGGUGCCCgcgucGCGCAgCCUCa -3'
miRNA:   3'- uaGguGCCGUCGUGGG-----UGUGUgGGAG- -5'
23363 3' -59.9 NC_005259.1 + 45736 0.67 0.410468
Target:  5'- -aCCACcgaGGCcGCGCaCCgccucggggaugaGCACGCCCUCg -3'
miRNA:   3'- uaGGUG---CCGuCGUG-GG-------------UGUGUGGGAG- -5'
23363 3' -59.9 NC_005259.1 + 13336 0.67 0.411374
Target:  5'- -cCCACGGCGGgacCGCCCcgcCGCACCgaUCa -3'
miRNA:   3'- uaGGUGCCGUC---GUGGGu--GUGUGGg-AG- -5'
23363 3' -59.9 NC_005259.1 + 61958 0.67 0.411374
Target:  5'- -gCCACcGCAGC-CUCACGCGCCgCUg -3'
miRNA:   3'- uaGGUGcCGUCGuGGGUGUGUGG-GAg -5'
23363 3' -59.9 NC_005259.1 + 255 0.67 0.420503
Target:  5'- -gCCACGGCaaaacggcuagGGCgguguacgccGCCUACGCGgCCUCg -3'
miRNA:   3'- uaGGUGCCG-----------UCG----------UGGGUGUGUgGGAG- -5'
23363 3' -59.9 NC_005259.1 + 27089 0.67 0.428823
Target:  5'- uUCUGCGGCGGCugCCAUgcgguggGCugUgUCa -3'
miRNA:   3'- uAGGUGCCGUCGugGGUG-------UGugGgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.