miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23364 3' -57.1 NC_005259.1 + 2019 0.66 0.66581
Target:  5'- gGUGGCGCACcGGCaccucaGUGCgGUGGGCg -3'
miRNA:   3'- -CACUGCGUGaCUGg-----CACGgUGCUCGg -5'
23364 3' -57.1 NC_005259.1 + 5918 0.69 0.497633
Target:  5'- gGUGcuGCGCACcgucGACCGUaagggagaacGCUACGAGCg -3'
miRNA:   3'- -CAC--UGCGUGa---CUGGCA----------CGGUGCUCGg -5'
23364 3' -57.1 NC_005259.1 + 6448 0.66 0.708052
Target:  5'- -cGuCGCGCUGAUCG-GCaGCGucGCCg -3'
miRNA:   3'- caCuGCGUGACUGGCaCGgUGCu-CGG- -5'
23364 3' -57.1 NC_005259.1 + 6646 0.68 0.548919
Target:  5'- cGUGACGaCACggucgagggUGuCCGUGaCgCGCGAGCUg -3'
miRNA:   3'- -CACUGC-GUG---------ACuGGCAC-G-GUGCUCGG- -5'
23364 3' -57.1 NC_005259.1 + 8836 0.67 0.623088
Target:  5'- uUGACGCGCUGcGCCGaccaccacagcgUGCC-CGccGCCu -3'
miRNA:   3'- cACUGCGUGAC-UGGC------------ACGGuGCu-CGG- -5'
23364 3' -57.1 NC_005259.1 + 8952 0.66 0.69652
Target:  5'- -gGGCGCGCcGuggacgggcACCGUGCCGgGAcguagguGCCa -3'
miRNA:   3'- caCUGCGUGaC---------UGGCACGGUgCU-------CGG- -5'
23364 3' -57.1 NC_005259.1 + 14226 0.66 0.68703
Target:  5'- -cGGCGCGCg--UCGUGCguauCGGGCCg -3'
miRNA:   3'- caCUGCGUGacuGGCACGgu--GCUCGG- -5'
23364 3' -57.1 NC_005259.1 + 14743 0.71 0.38214
Target:  5'- aUGuACGCGCUGGCCGgGCCggugauccugcacaACGcGCCg -3'
miRNA:   3'- cAC-UGCGUGACUGGCaCGG--------------UGCuCGG- -5'
23364 3' -57.1 NC_005259.1 + 15542 0.68 0.56991
Target:  5'- -cGcCGuCACUGGCCgGUGCCACccucagguGGCCa -3'
miRNA:   3'- caCuGC-GUGACUGG-CACGGUGc-------UCGG- -5'
23364 3' -57.1 NC_005259.1 + 18457 0.67 0.612403
Target:  5'- --cGCGCACaccgccgguccUGAgCCGUGCC-CGAcGCCg -3'
miRNA:   3'- cacUGCGUG-----------ACU-GGCACGGuGCU-CGG- -5'
23364 3' -57.1 NC_005259.1 + 20124 0.67 0.612403
Target:  5'- -aGGcCGCACUGGCUGccGUCGCGAugacggcaGCCg -3'
miRNA:   3'- caCU-GCGUGACUGGCa-CGGUGCU--------CGG- -5'
23364 3' -57.1 NC_005259.1 + 20612 0.66 0.68703
Target:  5'- -cGGCGCACcgcGACCGUGUCGau-GCg -3'
miRNA:   3'- caCUGCGUGa--CUGGCACGGUgcuCGg -5'
23364 3' -57.1 NC_005259.1 + 20824 0.67 0.64447
Target:  5'- -cGGCGCaccaagGCUGACCGUgaGUC-CGAcGCCu -3'
miRNA:   3'- caCUGCG------UGACUGGCA--CGGuGCU-CGG- -5'
23364 3' -57.1 NC_005259.1 + 22018 0.68 0.58154
Target:  5'- -cGGuCGCACUG-CCGUcaacggauaccagaaCCGCGAGCCc -3'
miRNA:   3'- caCU-GCGUGACuGGCAc--------------GGUGCUCGG- -5'
23364 3' -57.1 NC_005259.1 + 22330 0.66 0.697571
Target:  5'- -cGACGCACUGuuCGcaggauuuaccGCCACGAuGCg -3'
miRNA:   3'- caCUGCGUGACugGCa----------CGGUGCU-CGg -5'
23364 3' -57.1 NC_005259.1 + 22672 0.74 0.276268
Target:  5'- -cGACGCACUGACCGccGCCGauuuccccGCCg -3'
miRNA:   3'- caCUGCGUGACUGGCa-CGGUgcu-----CGG- -5'
23364 3' -57.1 NC_005259.1 + 23878 0.72 0.359272
Target:  5'- -gGAUGCGCUauCCGcUGCCGCccGAGCCg -3'
miRNA:   3'- caCUGCGUGAcuGGC-ACGGUG--CUCGG- -5'
23364 3' -57.1 NC_005259.1 + 25329 0.67 0.64447
Target:  5'- -cGACaucauccCGCUcACUGUGCC-CGAGCCg -3'
miRNA:   3'- caCUGc------GUGAcUGGCACGGuGCUCGG- -5'
23364 3' -57.1 NC_005259.1 + 27255 0.69 0.487627
Target:  5'- gGUGACcCGCguagGACCGauacGCCGCcuuGAGCCg -3'
miRNA:   3'- -CACUGcGUGa---CUGGCa---CGGUG---CUCGG- -5'
23364 3' -57.1 NC_005259.1 + 27354 0.68 0.548919
Target:  5'- -cGcCGUACUGAUCGgGCUugGuGCCc -3'
miRNA:   3'- caCuGCGUGACUGGCaCGGugCuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.