Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23364 | 3' | -57.1 | NC_005259.1 | + | 55616 | 0.67 | 0.612403 |
Target: 5'- --cGCGCGCcuUGGCCGggaucaggGCCuguagACGAGCCc -3' miRNA: 3'- cacUGCGUG--ACUGGCa-------CGG-----UGCUCGG- -5' |
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23364 | 3' | -57.1 | NC_005259.1 | + | 38934 | 0.67 | 0.612403 |
Target: 5'- gGUGuuGCugUGcCCgGUGCCGCugccgccgaGAGCCu -3' miRNA: 3'- -CACugCGugACuGG-CACGGUG---------CUCGG- -5' |
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23364 | 3' | -57.1 | NC_005259.1 | + | 42384 | 0.67 | 0.612403 |
Target: 5'- -aGGCGgGCaGGCCG-GuCCAUGAGUCg -3' miRNA: 3'- caCUGCgUGaCUGGCaC-GGUGCUCGG- -5' |
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23364 | 3' | -57.1 | NC_005259.1 | + | 20124 | 0.67 | 0.612403 |
Target: 5'- -aGGcCGCACUGGCUGccGUCGCGAugacggcaGCCg -3' miRNA: 3'- caCU-GCGUGACUGGCa-CGGUGCU--------CGG- -5' |
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23364 | 3' | -57.1 | NC_005259.1 | + | 29930 | 0.67 | 0.601735 |
Target: 5'- -cGACGCG-UGGCC--GCCACGcGGCCc -3' miRNA: 3'- caCUGCGUgACUGGcaCGGUGC-UCGG- -5' |
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23364 | 3' | -57.1 | NC_005259.1 | + | 51151 | 0.67 | 0.591091 |
Target: 5'- aUGAgCGCGuucgggUUGACCGUG--GCGAGCCa -3' miRNA: 3'- cACU-GCGU------GACUGGCACggUGCUCGG- -5' |
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23364 | 3' | -57.1 | NC_005259.1 | + | 22018 | 0.68 | 0.58154 |
Target: 5'- -cGGuCGCACUG-CCGUcaacggauaccagaaCCGCGAGCCc -3' miRNA: 3'- caCU-GCGUGACuGGCAc--------------GGUGCUCGG- -5' |
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23364 | 3' | -57.1 | NC_005259.1 | + | 15542 | 0.68 | 0.56991 |
Target: 5'- -cGcCGuCACUGGCCgGUGCCACccucagguGGCCa -3' miRNA: 3'- caCuGC-GUGACUGG-CACGGUGc-------UCGG- -5' |
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23364 | 3' | -57.1 | NC_005259.1 | + | 27354 | 0.68 | 0.548919 |
Target: 5'- -cGcCGUACUGAUCGgGCUugGuGCCc -3' miRNA: 3'- caCuGCGUGACUGGCaCGGugCuCGG- -5' |
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23364 | 3' | -57.1 | NC_005259.1 | + | 6646 | 0.68 | 0.548919 |
Target: 5'- cGUGACGaCACggucgagggUGuCCGUGaCgCGCGAGCUg -3' miRNA: 3'- -CACUGC-GUG---------ACuGGCAC-G-GUGCUCGG- -5' |
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23364 | 3' | -57.1 | NC_005259.1 | + | 67388 | 0.68 | 0.548919 |
Target: 5'- --uACGC-UUGGCCucggggGUGUCACGGGCCg -3' miRNA: 3'- cacUGCGuGACUGG------CACGGUGCUCGG- -5' |
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23364 | 3' | -57.1 | NC_005259.1 | + | 31714 | 0.68 | 0.537476 |
Target: 5'- -cGAUGCcggucuucucugaGgUGACCGcgccUGCCGCGAGCg -3' miRNA: 3'- caCUGCG-------------UgACUGGC----ACGGUGCUCGg -5' |
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23364 | 3' | -57.1 | NC_005259.1 | + | 37228 | 0.69 | 0.50773 |
Target: 5'- -cGGgGCGCUGGcCCGUGCCGgauUGGcuGCCg -3' miRNA: 3'- caCUgCGUGACU-GGCACGGU---GCU--CGG- -5' |
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23364 | 3' | -57.1 | NC_005259.1 | + | 5918 | 0.69 | 0.497633 |
Target: 5'- gGUGcuGCGCACcgucGACCGUaagggagaacGCUACGAGCg -3' miRNA: 3'- -CAC--UGCGUGa---CUGGCA----------CGGUGCUCGg -5' |
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23364 | 3' | -57.1 | NC_005259.1 | + | 32293 | 0.69 | 0.487627 |
Target: 5'- gGUGAUGCcUUGGCCcagaGCCuuGAGCCg -3' miRNA: 3'- -CACUGCGuGACUGGca--CGGugCUCGG- -5' |
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23364 | 3' | -57.1 | NC_005259.1 | + | 27255 | 0.69 | 0.487627 |
Target: 5'- gGUGACcCGCguagGACCGauacGCCGCcuuGAGCCg -3' miRNA: 3'- -CACUGcGUGa---CUGGCa---CGGUG---CUCGG- -5' |
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23364 | 3' | -57.1 | NC_005259.1 | + | 48498 | 0.7 | 0.448606 |
Target: 5'- -cGACGCGCUugagGGCCGcgacuUGCCGCacuGCCg -3' miRNA: 3'- caCUGCGUGA----CUGGC-----ACGGUGcu-CGG- -5' |
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23364 | 3' | -57.1 | NC_005259.1 | + | 51521 | 0.71 | 0.402369 |
Target: 5'- -cGACGCGCgUGACCucGUGCaCG-GGGCCg -3' miRNA: 3'- caCUGCGUG-ACUGG--CACG-GUgCUCGG- -5' |
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23364 | 3' | -57.1 | NC_005259.1 | + | 14743 | 0.71 | 0.38214 |
Target: 5'- aUGuACGCGCUGGCCGgGCCggugauccugcacaACGcGCCg -3' miRNA: 3'- cAC-UGCGUGACUGGCaCGG--------------UGCuCGG- -5' |
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23364 | 3' | -57.1 | NC_005259.1 | + | 40466 | 0.71 | 0.367629 |
Target: 5'- uUGACGUACUG-CCGgGCCGCGcGGUUg -3' miRNA: 3'- cACUGCGUGACuGGCaCGGUGC-UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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