miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23365 3' -58 NC_005259.1 + 41635 0.66 0.63378
Target:  5'- uGGUGGcGGUgCCgGUCugCGgGCGCUCGg -3'
miRNA:   3'- gUCGUC-CCA-GG-CAGugGUgUGCGAGU- -5'
23365 3' -58 NC_005259.1 + 24121 0.66 0.63378
Target:  5'- gGGCGGGGacuacaCCGcCGCCGCccUGCUCGc -3'
miRNA:   3'- gUCGUCCCa-----GGCaGUGGUGu-GCGAGU- -5'
23365 3' -58 NC_005259.1 + 4415 0.66 0.623088
Target:  5'- ---gAGGG-CCGcCACCGCGCGCcCGa -3'
miRNA:   3'- gucgUCCCaGGCaGUGGUGUGCGaGU- -5'
23365 3' -58 NC_005259.1 + 20944 0.66 0.591092
Target:  5'- gGGUGGGGUggcaCGUCuACUACACGCg-- -3'
miRNA:   3'- gUCGUCCCAg---GCAG-UGGUGUGCGagu -5'
23365 3' -58 NC_005259.1 + 28010 0.67 0.580481
Target:  5'- gGGCGGGGUcgCCGgggUugCGCGCGUUg- -3'
miRNA:   3'- gUCGUCCCA--GGCa--GugGUGUGCGAgu -5'
23365 3' -58 NC_005259.1 + 40896 0.67 0.580481
Target:  5'- uGGCGGGGUCgGcagCGuCC-CACGCUUg -3'
miRNA:   3'- gUCGUCCCAGgCa--GU-GGuGUGCGAGu -5'
23365 3' -58 NC_005259.1 + 41728 0.67 0.54892
Target:  5'- gCGGCGGGGaggacaCCGcCuCgACACGCUCGa -3'
miRNA:   3'- -GUCGUCCCa-----GGCaGuGgUGUGCGAGU- -5'
23365 3' -58 NC_005259.1 + 11027 0.67 0.547876
Target:  5'- aGGCAGGaGUUCGccggguggUCACCGCAUgacgugccgaucgGCUCAg -3'
miRNA:   3'- gUCGUCC-CAGGC--------AGUGGUGUG-------------CGAGU- -5'
23365 3' -58 NC_005259.1 + 46321 0.7 0.411374
Target:  5'- gCGGCcccgAGGGUCgCGUCGCgCAC-CGCUUg -3'
miRNA:   3'- -GUCG----UCCCAG-GCAGUG-GUGuGCGAGu -5'
23365 3' -58 NC_005259.1 + 14566 0.7 0.38474
Target:  5'- gAGCGGGGaCCGgcgaaCACCAuCGCGCUg- -3'
miRNA:   3'- gUCGUCCCaGGCa----GUGGU-GUGCGAgu -5'
23365 3' -58 NC_005259.1 + 63049 0.71 0.34296
Target:  5'- aCAGCAGcGGUgCGUaCAUCGCGaugaGCUCAg -3'
miRNA:   3'- -GUCGUC-CCAgGCA-GUGGUGUg---CGAGU- -5'
23365 3' -58 NC_005259.1 + 58691 0.71 0.327189
Target:  5'- -cGCGGGGUCggcuCGUCGCCGC-CGCcgUCAc -3'
miRNA:   3'- guCGUCCCAG----GCAGUGGUGuGCG--AGU- -5'
23365 3' -58 NC_005259.1 + 31496 0.71 0.326415
Target:  5'- aCAGCAGGGUC--UCACCGCGCcggacuuGCUUg -3'
miRNA:   3'- -GUCGUCCCAGgcAGUGGUGUG-------CGAGu -5'
23365 3' -58 NC_005259.1 + 24558 0.73 0.269533
Target:  5'- uCGGCGGGGUguacUCGUgggCACCGCACguGCUCAa -3'
miRNA:   3'- -GUCGUCCCA----GGCA---GUGGUGUG--CGAGU- -5'
23365 3' -58 NC_005259.1 + 164 0.81 0.072807
Target:  5'- cCGGCGGGGUCCGgCACCAC-CGaCUCGg -3'
miRNA:   3'- -GUCGUCCCAGGCaGUGGUGuGC-GAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.