miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23365 5' -59.1 NC_005259.1 + 1850 0.66 0.582353
Target:  5'- cGCCGAGGC-CGagaaAGCC-GcCGCcGCGu -3'
miRNA:   3'- -CGGCUCCGuGUg---UCGGuCaGCGuCGC- -5'
23365 5' -59.1 NC_005259.1 + 2128 0.71 0.300431
Target:  5'- cGCCGAGGuCACGCAGacccgcaCGGUgcuggccaGCGGCGu -3'
miRNA:   3'- -CGGCUCC-GUGUGUCg------GUCAg-------CGUCGC- -5'
23365 5' -59.1 NC_005259.1 + 3074 0.73 0.229111
Target:  5'- gGCCGAGGCcgACAagagAGCCg--CGCAGCGa -3'
miRNA:   3'- -CGGCUCCG--UGUg---UCGGucaGCGUCGC- -5'
23365 5' -59.1 NC_005259.1 + 4602 0.69 0.387734
Target:  5'- cGCCauAGGCACGCugucgGGCCGGUgGC-GCGa -3'
miRNA:   3'- -CGGc-UCCGUGUG-----UCGGUCAgCGuCGC- -5'
23365 5' -59.1 NC_005259.1 + 5723 0.67 0.530429
Target:  5'- cGCCGGacGGCGgccauucuCGCGGCCAa--GCGGCGa -3'
miRNA:   3'- -CGGCU--CCGU--------GUGUCGGUcagCGUCGC- -5'
23365 5' -59.1 NC_005259.1 + 8329 0.68 0.423362
Target:  5'- uGCCGAcGGCGauCAGCCGGUcaCGCuGCu -3'
miRNA:   3'- -CGGCU-CCGUguGUCGGUCA--GCGuCGc -5'
23365 5' -59.1 NC_005259.1 + 8488 0.66 0.582353
Target:  5'- cGCUGucGGCACugaugguguGCA-CCAGaCGCAGCGa -3'
miRNA:   3'- -CGGCu-CCGUG---------UGUcGGUCaGCGUCGC- -5'
23365 5' -59.1 NC_005259.1 + 8759 0.78 0.106671
Target:  5'- gGUCGAGGCcCuuGGCCAG-CGCGGCGg -3'
miRNA:   3'- -CGGCUCCGuGugUCGGUCaGCGUCGC- -5'
23365 5' -59.1 NC_005259.1 + 9158 0.67 0.500084
Target:  5'- cGUCGAcGGCAU---GCCGGUgGCAGCc -3'
miRNA:   3'- -CGGCU-CCGUGuguCGGUCAgCGUCGc -5'
23365 5' -59.1 NC_005259.1 + 10631 0.66 0.561418
Target:  5'- cGUCGAGGCcgaACAGCUuggccucgcGGUCG-AGCGc -3'
miRNA:   3'- -CGGCUCCGug-UGUCGG---------UCAGCgUCGC- -5'
23365 5' -59.1 NC_005259.1 + 11314 0.74 0.191575
Target:  5'- gGCCGAgacgGGCGCGCAGCUcGUCGuCGGUc -3'
miRNA:   3'- -CGGCU----CCGUGUGUCGGuCAGC-GUCGc -5'
23365 5' -59.1 NC_005259.1 + 12371 0.66 0.571863
Target:  5'- aCCGAGGUAguCGGCgAGa-GCGGCa -3'
miRNA:   3'- cGGCUCCGUguGUCGgUCagCGUCGc -5'
23365 5' -59.1 NC_005259.1 + 13432 0.71 0.304778
Target:  5'- cGCCGGGGC-CGC-GCUAGgcgugaccgucggCGCGGCGc -3'
miRNA:   3'- -CGGCUCCGuGUGuCGGUCa------------GCGUCGC- -5'
23365 5' -59.1 NC_005259.1 + 19305 0.71 0.315107
Target:  5'- cGCCGAGGCACucgaggaAGCCA-UCGC-GCu -3'
miRNA:   3'- -CGGCUCCGUGug-----UCGGUcAGCGuCGc -5'
23365 5' -59.1 NC_005259.1 + 20578 0.69 0.378288
Target:  5'- aUCGAGGCAUACGaCCGGUggaagucggacuaUGCGGCGc -3'
miRNA:   3'- cGGCUCCGUGUGUcGGUCA-------------GCGUCGC- -5'
23365 5' -59.1 NC_005259.1 + 24238 0.73 0.229111
Target:  5'- gGCCGAGGCACGCgaguucGGCgAGUgcgUGCAcGCGu -3'
miRNA:   3'- -CGGCUCCGUGUG------UCGgUCA---GCGU-CGC- -5'
23365 5' -59.1 NC_005259.1 + 24754 0.68 0.464728
Target:  5'- uGCCGAGGCGCucauCGaauccucgaccacccGCCGuaugCGCAGCa -3'
miRNA:   3'- -CGGCUCCGUGu---GU---------------CGGUca--GCGUCGc -5'
23365 5' -59.1 NC_005259.1 + 25991 0.67 0.500084
Target:  5'- cGCCGAGGUGaacaACGGa-AGUaGCAGCGg -3'
miRNA:   3'- -CGGCUCCGUg---UGUCggUCAgCGUCGC- -5'
23365 5' -59.1 NC_005259.1 + 27534 0.69 0.396455
Target:  5'- cGUCGAGGCccCACGGCgGgauGUUGCGGCc -3'
miRNA:   3'- -CGGCUCCGu-GUGUCGgU---CAGCGUCGc -5'
23365 5' -59.1 NC_005259.1 + 28019 0.68 0.470533
Target:  5'- cGCCGGGGUugcGCGCguuGGCCAGcCaCGGCu -3'
miRNA:   3'- -CGGCUCCG---UGUG---UCGGUCaGcGUCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.