miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23365 5' -59.1 NC_005259.1 + 24754 0.68 0.464728
Target:  5'- uGCCGAGGCGCucauCGaauccucgaccacccGCCGuaugCGCAGCa -3'
miRNA:   3'- -CGGCUCCGUGu---GU---------------CGGUca--GCGUCGc -5'
23365 5' -59.1 NC_005259.1 + 53665 0.68 0.46088
Target:  5'- gGCCGAGGCcccACGCGGgCA-UCGCGaugguGCGa -3'
miRNA:   3'- -CGGCUCCG---UGUGUCgGUcAGCGU-----CGC- -5'
23365 5' -59.1 NC_005259.1 + 28286 0.68 0.451333
Target:  5'- uGCCGAuguaGGcCACGguGCCGcccugCGCAGCGu -3'
miRNA:   3'- -CGGCU----CC-GUGUguCGGUca---GCGUCGC- -5'
23365 5' -59.1 NC_005259.1 + 55040 0.68 0.432571
Target:  5'- uGCCGAGGUGCuu-GCCucGGUgGCAGUc -3'
miRNA:   3'- -CGGCUCCGUGuguCGG--UCAgCGUCGc -5'
23365 5' -59.1 NC_005259.1 + 48436 0.68 0.432571
Target:  5'- aCCGAGGCGCG-AGgCAG-CGgCAGCGc -3'
miRNA:   3'- cGGCUCCGUGUgUCgGUCaGC-GUCGC- -5'
23365 5' -59.1 NC_005259.1 + 8329 0.68 0.423362
Target:  5'- uGCCGAcGGCGauCAGCCGGUcaCGCuGCu -3'
miRNA:   3'- -CGGCU-CCGUguGUCGGUCA--GCGuCGc -5'
23365 5' -59.1 NC_005259.1 + 46302 0.68 0.423362
Target:  5'- cGCCGuGGCugcguuguuCGCGGCCccgagGGUCGCGucGCGc -3'
miRNA:   3'- -CGGCuCCGu--------GUGUCGG-----UCAGCGU--CGC- -5'
23365 5' -59.1 NC_005259.1 + 58772 0.69 0.414271
Target:  5'- cGCUGcGGGCGCuguGC-GCCGGUCGaGGCGg -3'
miRNA:   3'- -CGGC-UCCGUG---UGuCGGUCAGCgUCGC- -5'
23365 5' -59.1 NC_005259.1 + 27534 0.69 0.396455
Target:  5'- cGUCGAGGCccCACGGCgGgauGUUGCGGCc -3'
miRNA:   3'- -CGGCUCCGu-GUGUCGgU---CAGCGUCGc -5'
23365 5' -59.1 NC_005259.1 + 61951 0.69 0.396455
Target:  5'- uGCCGGGGCcacCGCAGCCucacgCGCcGCu -3'
miRNA:   3'- -CGGCUCCGu--GUGUCGGuca--GCGuCGc -5'
23365 5' -59.1 NC_005259.1 + 63182 0.69 0.387734
Target:  5'- cGCCGAGGUgaucGCACc-CCGGUCGU-GCGc -3'
miRNA:   3'- -CGGCUCCG----UGUGucGGUCAGCGuCGC- -5'
23365 5' -59.1 NC_005259.1 + 44368 0.69 0.387734
Target:  5'- uGCCGAGGCucgccACACcGCCcaugauGUCGCcgAGCa -3'
miRNA:   3'- -CGGCUCCG-----UGUGuCGGu-----CAGCG--UCGc -5'
23365 5' -59.1 NC_005259.1 + 4602 0.69 0.387734
Target:  5'- cGCCauAGGCACGCugucgGGCCGGUgGC-GCGa -3'
miRNA:   3'- -CGGc-UCCGUGUG-----UCGGUCAgCGuCGC- -5'
23365 5' -59.1 NC_005259.1 + 35887 0.69 0.378288
Target:  5'- cGCCGAGGCAgACcacggcgAGCCAuucugcGUUGC-GCGg -3'
miRNA:   3'- -CGGCUCCGUgUG-------UCGGU------CAGCGuCGC- -5'
23365 5' -59.1 NC_005259.1 + 20578 0.69 0.378288
Target:  5'- aUCGAGGCAUACGaCCGGUggaagucggacuaUGCGGCGc -3'
miRNA:   3'- cGGCUCCGUGUGUcGGUCA-------------GCGUCGC- -5'
23365 5' -59.1 NC_005259.1 + 44995 0.69 0.370675
Target:  5'- uGCCGAGGCACcgccgACcGCCGGggccgCGCcGCc -3'
miRNA:   3'- -CGGCUCCGUG-----UGuCGGUCa----GCGuCGc -5'
23365 5' -59.1 NC_005259.1 + 64444 0.7 0.354136
Target:  5'- uGCCGGGGCGCu--GCCcuuGggGCGGCGa -3'
miRNA:   3'- -CGGCUCCGUGuguCGGu--CagCGUCGC- -5'
23365 5' -59.1 NC_005259.1 + 68699 0.7 0.354136
Target:  5'- aUCGAGGCGgGCAGCgC-GUCGguGCc -3'
miRNA:   3'- cGGCUCCGUgUGUCG-GuCAGCguCGc -5'
23365 5' -59.1 NC_005259.1 + 44273 0.7 0.354136
Target:  5'- aUCGAGGCcgaACGCcuuGGCCAG-CGCgAGCGg -3'
miRNA:   3'- cGGCUCCG---UGUG---UCGGUCaGCG-UCGC- -5'
23365 5' -59.1 NC_005259.1 + 58548 0.7 0.345264
Target:  5'- cGUCGAGGUuacggcucgggcgGUugGGCCGGaUCGCGGCGc -3'
miRNA:   3'- -CGGCUCCG-------------UGugUCGGUC-AGCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.