Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23366 | 3' | -56.5 | NC_005259.1 | + | 4948 | 0.66 | 0.769609 |
Target: 5'- gCCCGaaaaCGGCUA-CGACgaUCCGGUAuCCGc -3' miRNA: 3'- -GGGCa---GCCGAUaGCUG--GGGCUAU-GGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 5301 | 0.66 | 0.769609 |
Target: 5'- aCCGgUGGCcucacucgacAUCGACaacaCCGAUGCCGu -3' miRNA: 3'- gGGCaGCCGa---------UAGCUGg---GGCUAUGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 6446 | 0.71 | 0.473122 |
Target: 5'- aCCGUCGcGCUgAUCGGCagcgucgCCGGUGCCc -3' miRNA: 3'- gGGCAGC-CGA-UAGCUGg------GGCUAUGGc -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 7424 | 0.67 | 0.719863 |
Target: 5'- gCCGUCGGCg---GugCCCGc-GCCGc -3' miRNA: 3'- gGGCAGCCGauagCugGGGCuaUGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 9513 | 0.67 | 0.719863 |
Target: 5'- gCUCGUCGcGCgcGUCGACCgccgCCGGgucACCGg -3' miRNA: 3'- -GGGCAGC-CGa-UAGCUGG----GGCUa--UGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 11861 | 0.73 | 0.373687 |
Target: 5'- aCCCGUCGGCgaacgUGACCgCCGc-ACCGu -3' miRNA: 3'- -GGGCAGCCGaua--GCUGG-GGCuaUGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 12938 | 0.69 | 0.573785 |
Target: 5'- aCCGgacccCGGCUGcgCGACCCCGcaucgACCc -3' miRNA: 3'- gGGCa----GCCGAUa-GCUGGGGCua---UGGc -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 13454 | 0.73 | 0.390694 |
Target: 5'- aCCGUCGGCg--CGGCgCUGGUGCUc -3' miRNA: 3'- gGGCAGCCGauaGCUGgGGCUAUGGc -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 13692 | 0.75 | 0.275796 |
Target: 5'- aCCCGU-GGCcgGUCGACCCCGccucgacACCGa -3' miRNA: 3'- -GGGCAgCCGa-UAGCUGGGGCua-----UGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 16453 | 0.71 | 0.463521 |
Target: 5'- aCCGUCGGC-AUCGguACCCCGccgcagaucGCCGu -3' miRNA: 3'- gGGCAGCCGaUAGC--UGGGGCua-------UGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 18193 | 0.68 | 0.625075 |
Target: 5'- cCCCGacaUCGcacccaaGCagGUCGACCCCGAUcacgcgaugACCGg -3' miRNA: 3'- -GGGC---AGC-------CGa-UAGCUGGGGCUA---------UGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 18464 | 0.66 | 0.769609 |
Target: 5'- aCCGcCGGUccugagcCGugCCCGAcGCCGa -3' miRNA: 3'- gGGCaGCCGaua----GCugGGGCUaUGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 18565 | 0.66 | 0.74007 |
Target: 5'- gCCGUaCGccGCcgcCGACCCCGAgcagACCGa -3' miRNA: 3'- gGGCA-GC--CGauaGCUGGGGCUa---UGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 20458 | 0.71 | 0.454024 |
Target: 5'- gCCGgggUGGCUcggaugaccgccGUCGACCUCGAcACCGc -3' miRNA: 3'- gGGCa--GCCGA------------UAGCUGGGGCUaUGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 23739 | 0.66 | 0.769609 |
Target: 5'- -aCGUgGGacggCGACCCCGAcGCCc -3' miRNA: 3'- ggGCAgCCgauaGCUGGGGCUaUGGc -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 23929 | 0.67 | 0.709635 |
Target: 5'- aCgGUCGGCaccaguacaUGUUGcgcACCCCGAgacggGCCGa -3' miRNA: 3'- gGgCAGCCG---------AUAGC---UGGGGCUa----UGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 25103 | 0.69 | 0.615616 |
Target: 5'- cCCCGagcaagGGCaagGUCGACCCCGccgACCu -3' miRNA: 3'- -GGGCag----CCGa--UAGCUGGGGCua-UGGc -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 26386 | 0.68 | 0.636642 |
Target: 5'- gCCUGUU-GCUcgCGAUUCCGAcGCCGg -3' miRNA: 3'- -GGGCAGcCGAuaGCUGGGGCUaUGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 28233 | 0.72 | 0.426184 |
Target: 5'- aCCGUCGGCggcggggugGUCGAUcacgauccauugCCCGAaACCGu -3' miRNA: 3'- gGGCAGCCGa--------UAGCUG------------GGGCUaUGGC- -5' |
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23366 | 3' | -56.5 | NC_005259.1 | + | 30554 | 0.67 | 0.730011 |
Target: 5'- aCCGagCGGUUGUUGACgCCCuugGCCGc -3' miRNA: 3'- gGGCa-GCCGAUAGCUG-GGGcuaUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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