miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23366 3' -56.5 NC_005259.1 + 26386 0.68 0.636642
Target:  5'- gCCUGUU-GCUcgCGAUUCCGAcGCCGg -3'
miRNA:   3'- -GGGCAGcCGAuaGCUGGGGCUaUGGC- -5'
23366 3' -56.5 NC_005259.1 + 56386 0.68 0.626126
Target:  5'- gCCgCGUCGGCUgaucgucucgAUgGugCCCGGcccGCCGa -3'
miRNA:   3'- -GG-GCAGCCGA----------UAgCugGGGCUa--UGGC- -5'
23366 3' -56.5 NC_005259.1 + 18193 0.68 0.625075
Target:  5'- cCCCGacaUCGcacccaaGCagGUCGACCCCGAUcacgcgaugACCGg -3'
miRNA:   3'- -GGGC---AGC-------CGa-UAGCUGGGGCUA---------UGGC- -5'
23366 3' -56.5 NC_005259.1 + 25103 0.69 0.615616
Target:  5'- cCCCGagcaagGGCaagGUCGACCCCGccgACCu -3'
miRNA:   3'- -GGGCag----CCGa--UAGCUGGGGCua-UGGc -5'
23366 3' -56.5 NC_005259.1 + 67844 0.69 0.594643
Target:  5'- gCCCGgUGaGCggGUCGACCaauCGGUGCCGu -3'
miRNA:   3'- -GGGCaGC-CGa-UAGCUGGg--GCUAUGGC- -5'
23366 3' -56.5 NC_005259.1 + 12938 0.69 0.573785
Target:  5'- aCCGgacccCGGCUGcgCGACCCCGcaucgACCc -3'
miRNA:   3'- gGGCa----GCCGAUa-GCUGGGGCua---UGGc -5'
23366 3' -56.5 NC_005259.1 + 35480 0.69 0.569632
Target:  5'- gCCCGguaGGCcgaacgauccuggGUUGGCCCCGuUGCCGc -3'
miRNA:   3'- -GGGCag-CCGa------------UAGCUGGGGCuAUGGC- -5'
23366 3' -56.5 NC_005259.1 + 67212 0.69 0.563418
Target:  5'- gCUGUCGGCgggGUCGAUgCCGA--CCa -3'
miRNA:   3'- gGGCAGCCGa--UAGCUGgGGCUauGGc -5'
23366 3' -56.5 NC_005259.1 + 39567 0.7 0.522521
Target:  5'- gUCGUcCGGCc--CGACCUCGAUGCUGu -3'
miRNA:   3'- gGGCA-GCCGauaGCUGGGGCUAUGGC- -5'
23366 3' -56.5 NC_005259.1 + 6446 0.71 0.473122
Target:  5'- aCCGUCGcGCUgAUCGGCagcgucgCCGGUGCCc -3'
miRNA:   3'- gGGCAGC-CGA-UAGCUGg------GGCUAUGGc -5'
23366 3' -56.5 NC_005259.1 + 16453 0.71 0.463521
Target:  5'- aCCGUCGGC-AUCGguACCCCGccgcagaucGCCGu -3'
miRNA:   3'- gGGCAGCCGaUAGC--UGGGGCua-------UGGC- -5'
23366 3' -56.5 NC_005259.1 + 20458 0.71 0.454024
Target:  5'- gCCGgggUGGCUcggaugaccgccGUCGACCUCGAcACCGc -3'
miRNA:   3'- gGGCa--GCCGA------------UAGCUGGGGCUaUGGC- -5'
23366 3' -56.5 NC_005259.1 + 67722 0.72 0.426184
Target:  5'- aCCCGUCaGCc-UCGA-UCCGAUACCGg -3'
miRNA:   3'- -GGGCAGcCGauAGCUgGGGCUAUGGC- -5'
23366 3' -56.5 NC_005259.1 + 28233 0.72 0.426184
Target:  5'- aCCGUCGGCggcggggugGUCGAUcacgauccauugCCCGAaACCGu -3'
miRNA:   3'- gGGCAGCCGa--------UAGCUG------------GGGCUaUGGC- -5'
23366 3' -56.5 NC_005259.1 + 38929 0.72 0.408198
Target:  5'- -aCGUCGGUguugcUGugCCCGGUGCCGc -3'
miRNA:   3'- ggGCAGCCGaua--GCugGGGCUAUGGC- -5'
23366 3' -56.5 NC_005259.1 + 31685 0.72 0.399385
Target:  5'- gCCCGaggcauccUCGGCgg-UGACCacaCCGAUGCCGg -3'
miRNA:   3'- -GGGC--------AGCCGauaGCUGG---GGCUAUGGC- -5'
23366 3' -56.5 NC_005259.1 + 13454 0.73 0.390694
Target:  5'- aCCGUCGGCg--CGGCgCUGGUGCUc -3'
miRNA:   3'- gGGCAGCCGauaGCUGgGGCUAUGGc -5'
23366 3' -56.5 NC_005259.1 + 42501 0.73 0.388111
Target:  5'- aCCCGUcCGGCggUGUggccagcagccgucCGGCCCCGAUgggcACCGa -3'
miRNA:   3'- -GGGCA-GCCG--AUA--------------GCUGGGGCUA----UGGC- -5'
23366 3' -56.5 NC_005259.1 + 11861 0.73 0.373687
Target:  5'- aCCCGUCGGCgaacgUGACCgCCGc-ACCGu -3'
miRNA:   3'- -GGGCAGCCGaua--GCUGG-GGCuaUGGC- -5'
23366 3' -56.5 NC_005259.1 + 13692 0.75 0.275796
Target:  5'- aCCCGU-GGCcgGUCGACCCCGccucgacACCGa -3'
miRNA:   3'- -GGGCAgCCGa-UAGCUGGGGCua-----UGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.