Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23367 | 5' | -50.6 | NC_005259.1 | + | 66665 | 0.66 | 0.970138 |
Target: 5'- gGCGGUgCUGCGAUGcuCAUCgUGccGCCCa -3' miRNA: 3'- -CGCUA-GAUGUUGCu-GUAGgAC--UGGGg -5' |
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23367 | 5' | -50.6 | NC_005259.1 | + | 42669 | 0.68 | 0.893207 |
Target: 5'- cGCGG-CUGCuguUGGCgAUCUcGACCCCg -3' miRNA: 3'- -CGCUaGAUGuu-GCUG-UAGGaCUGGGG- -5' |
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23367 | 5' | -50.6 | NC_005259.1 | + | 38245 | 0.68 | 0.900253 |
Target: 5'- aGCGAUggugccgccUUugAACGAUA-CCgacGACCCCg -3' miRNA: 3'- -CGCUA---------GAugUUGCUGUaGGa--CUGGGG- -5' |
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23367 | 5' | -50.6 | NC_005259.1 | + | 44715 | 0.68 | 0.907028 |
Target: 5'- cCGAUCUGCAACGcacccggcagcGCGcCCUcGACCgCg -3' miRNA: 3'- cGCUAGAUGUUGC-----------UGUaGGA-CUGGgG- -5' |
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23367 | 5' | -50.6 | NC_005259.1 | + | 53023 | 0.68 | 0.907028 |
Target: 5'- uGCGGUg-GCGucgaGGCAUCgUGACCUCg -3' miRNA: 3'- -CGCUAgaUGUug--CUGUAGgACUGGGG- -5' |
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23367 | 5' | -50.6 | NC_005259.1 | + | 50759 | 0.68 | 0.907028 |
Target: 5'- cGCGGUgUcgGACGACA-CCUcGGCCUCg -3' miRNA: 3'- -CGCUAgAugUUGCUGUaGGA-CUGGGG- -5' |
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23367 | 5' | -50.6 | NC_005259.1 | + | 66364 | 0.68 | 0.913529 |
Target: 5'- aGCGAUCUGC-GCGugGcacagCCacGugCCCa -3' miRNA: 3'- -CGCUAGAUGuUGCugUa----GGa-CugGGG- -5' |
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23367 | 5' | -50.6 | NC_005259.1 | + | 44256 | 0.68 | 0.913529 |
Target: 5'- cGCGAgaaguCGGCGACAUCgaGGCCg- -3' miRNA: 3'- -CGCUagau-GUUGCUGUAGgaCUGGgg -5' |
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23367 | 5' | -50.6 | NC_005259.1 | + | 13878 | 0.68 | 0.919753 |
Target: 5'- cGgGAUC-ACGugGugAcCCgaGACCCCg -3' miRNA: 3'- -CgCUAGaUGUugCugUaGGa-CUGGGG- -5' |
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23367 | 5' | -50.6 | NC_005259.1 | + | 14588 | 0.69 | 0.854084 |
Target: 5'- uCGcgCUGgcCAcCGACAUCgaGACCCCc -3' miRNA: 3'- cGCuaGAU--GUuGCUGUAGgaCUGGGG- -5' |
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23367 | 5' | -50.6 | NC_005259.1 | + | 58506 | 0.7 | 0.82683 |
Target: 5'- cGCGGUCUAgGGuCGACAcgaCCUGACgggcaaauuccugCCCg -3' miRNA: 3'- -CGCUAGAUgUU-GCUGUa--GGACUG-------------GGG- -5' |
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23367 | 5' | -50.6 | NC_005259.1 | + | 58324 | 0.71 | 0.789762 |
Target: 5'- gGUGAUCUcggGCAGCGAgAUCaggucggUGGCCUCg -3' miRNA: 3'- -CGCUAGA---UGUUGCUgUAGg------ACUGGGG- -5' |
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23367 | 5' | -50.6 | NC_005259.1 | + | 24311 | 0.75 | 0.563763 |
Target: 5'- cGCGAUCUACc-CGACAuggUCC-GGCCUCa -3' miRNA: 3'- -CGCUAGAUGuuGCUGU---AGGaCUGGGG- -5' |
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23367 | 5' | -50.6 | NC_005259.1 | + | 7397 | 0.75 | 0.582329 |
Target: 5'- cGCGAgacCcGCAACGGCAUCCUcgucgccgucggcgGugCCCg -3' miRNA: 3'- -CGCUa--GaUGUUGCUGUAGGA--------------CugGGG- -5' |
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23367 | 5' | -50.6 | NC_005259.1 | + | 43203 | 0.74 | 0.640787 |
Target: 5'- gGCGAUgU-CGACGcCcgCCUGACCCg -3' miRNA: 3'- -CGCUAgAuGUUGCuGuaGGACUGGGg -5' |
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23367 | 5' | -50.6 | NC_005259.1 | + | 52820 | 0.72 | 0.705509 |
Target: 5'- gGCGAguuuuCGAgGGCAUCCUcgacacgGACCCCg -3' miRNA: 3'- -CGCUagau-GUUgCUGUAGGA-------CUGGGG- -5' |
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23367 | 5' | -50.6 | NC_005259.1 | + | 5100 | 0.72 | 0.728057 |
Target: 5'- gGCGAUCUGCGuaGACcgCgUUGACCCg -3' miRNA: 3'- -CGCUAGAUGUugCUGuaG-GACUGGGg -5' |
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23367 | 5' | -50.6 | NC_005259.1 | + | 54039 | 0.72 | 0.73865 |
Target: 5'- uGCGGUCUGCGAa-GCAuUCCUuGCCCUc -3' miRNA: 3'- -CGCUAGAUGUUgcUGU-AGGAcUGGGG- -5' |
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23367 | 5' | -50.6 | NC_005259.1 | + | 18691 | 0.71 | 0.759501 |
Target: 5'- -gGGUCUGCuugagcACGGCggUCUGACCUCg -3' miRNA: 3'- cgCUAGAUGu-----UGCUGuaGGACUGGGG- -5' |
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23367 | 5' | -50.6 | NC_005259.1 | + | 67997 | 0.71 | 0.786798 |
Target: 5'- cGCGAgcgucgacuugcccUcCUGCGGCGGCAUCgaGAUCUCa -3' miRNA: 3'- -CGCU--------------A-GAUGUUGCUGUAGgaCUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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