miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23367 5' -50.6 NC_005259.1 + 15290 0.67 0.931365
Target:  5'- aGCGAUCUACAcCGcCGaCCUcGCCgCCc -3'
miRNA:   3'- -CGCUAGAUGUuGCuGUaGGAcUGG-GG- -5'
23367 5' -50.6 NC_005259.1 + 13878 0.68 0.919753
Target:  5'- cGgGAUC-ACGugGugAcCCgaGACCCCg -3'
miRNA:   3'- -CgCUAGaUGUugCugUaGGa-CUGGGG- -5'
23367 5' -50.6 NC_005259.1 + 44256 0.68 0.913529
Target:  5'- cGCGAgaaguCGGCGACAUCgaGGCCg- -3'
miRNA:   3'- -CGCUagau-GUUGCUGUAGgaCUGGgg -5'
23367 5' -50.6 NC_005259.1 + 66364 0.68 0.913529
Target:  5'- aGCGAUCUGC-GCGugGcacagCCacGugCCCa -3'
miRNA:   3'- -CGCUAGAUGuUGCugUa----GGa-CugGGG- -5'
23367 5' -50.6 NC_005259.1 + 44715 0.68 0.907028
Target:  5'- cCGAUCUGCAACGcacccggcagcGCGcCCUcGACCgCg -3'
miRNA:   3'- cGCUAGAUGUUGC-----------UGUaGGA-CUGGgG- -5'
23367 5' -50.6 NC_005259.1 + 53023 0.68 0.907028
Target:  5'- uGCGGUg-GCGucgaGGCAUCgUGACCUCg -3'
miRNA:   3'- -CGCUAgaUGUug--CUGUAGgACUGGGG- -5'
23367 5' -50.6 NC_005259.1 + 50759 0.68 0.907028
Target:  5'- cGCGGUgUcgGACGACA-CCUcGGCCUCg -3'
miRNA:   3'- -CGCUAgAugUUGCUGUaGGA-CUGGGG- -5'
23367 5' -50.6 NC_005259.1 + 38245 0.68 0.900253
Target:  5'- aGCGAUggugccgccUUugAACGAUA-CCgacGACCCCg -3'
miRNA:   3'- -CGCUA---------GAugUUGCUGUaGGa--CUGGGG- -5'
23367 5' -50.6 NC_005259.1 + 42669 0.68 0.893207
Target:  5'- cGCGG-CUGCuguUGGCgAUCUcGACCCCg -3'
miRNA:   3'- -CGCUaGAUGuu-GCUG-UAGGaCUGGGG- -5'
23367 5' -50.6 NC_005259.1 + 14588 0.69 0.854084
Target:  5'- uCGcgCUGgcCAcCGACAUCgaGACCCCc -3'
miRNA:   3'- cGCuaGAU--GUuGCUGUAGgaCUGGGG- -5'
23367 5' -50.6 NC_005259.1 + 58506 0.7 0.82683
Target:  5'- cGCGGUCUAgGGuCGACAcgaCCUGACgggcaaauuccugCCCg -3'
miRNA:   3'- -CGCUAGAUgUU-GCUGUa--GGACUG-------------GGG- -5'
23367 5' -50.6 NC_005259.1 + 58324 0.71 0.789762
Target:  5'- gGUGAUCUcggGCAGCGAgAUCaggucggUGGCCUCg -3'
miRNA:   3'- -CGCUAGA---UGUUGCUgUAGg------ACUGGGG- -5'
23367 5' -50.6 NC_005259.1 + 67997 0.71 0.786798
Target:  5'- cGCGAgcgucgacuugcccUcCUGCGGCGGCAUCgaGAUCUCa -3'
miRNA:   3'- -CGCU--------------A-GAUGUUGCUGUAGgaCUGGGG- -5'
23367 5' -50.6 NC_005259.1 + 18691 0.71 0.759501
Target:  5'- -gGGUCUGCuugagcACGGCggUCUGACCUCg -3'
miRNA:   3'- cgCUAGAUGu-----UGCUGuaGGACUGGGG- -5'
23367 5' -50.6 NC_005259.1 + 54039 0.72 0.73865
Target:  5'- uGCGGUCUGCGAa-GCAuUCCUuGCCCUc -3'
miRNA:   3'- -CGCUAGAUGUUgcUGU-AGGAcUGGGG- -5'
23367 5' -50.6 NC_005259.1 + 5100 0.72 0.728057
Target:  5'- gGCGAUCUGCGuaGACcgCgUUGACCCg -3'
miRNA:   3'- -CGCUAGAUGUugCUGuaG-GACUGGGg -5'
23367 5' -50.6 NC_005259.1 + 52820 0.72 0.705509
Target:  5'- gGCGAguuuuCGAgGGCAUCCUcgacacgGACCCCg -3'
miRNA:   3'- -CGCUagau-GUUgCUGUAGGA-------CUGGGG- -5'
23367 5' -50.6 NC_005259.1 + 43203 0.74 0.640787
Target:  5'- gGCGAUgU-CGACGcCcgCCUGACCCg -3'
miRNA:   3'- -CGCUAgAuGUUGCuGuaGGACUGGGg -5'
23367 5' -50.6 NC_005259.1 + 7397 0.75 0.582329
Target:  5'- cGCGAgacCcGCAACGGCAUCCUcgucgccgucggcgGugCCCg -3'
miRNA:   3'- -CGCUa--GaUGUUGCUGUAGGA--------------CugGGG- -5'
23367 5' -50.6 NC_005259.1 + 24311 0.75 0.563763
Target:  5'- cGCGAUCUACc-CGACAuggUCC-GGCCUCa -3'
miRNA:   3'- -CGCUAGAUGuuGCUGU---AGGaCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.