miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23368 5' -55.2 NC_005259.1 + 46302 0.71 0.474676
Target:  5'- -cGCCGUGGcugcguuGUUCGCGGCCccGAggGUCGc -3'
miRNA:   3'- gaCGGCACU-------CAAGCGUCGG--CUa-CAGC- -5'
23368 5' -55.2 NC_005259.1 + 63128 0.7 0.52666
Target:  5'- -gGUgGUGAGgUCGUAGCCGcUGUCc -3'
miRNA:   3'- gaCGgCACUCaAGCGUCGGCuACAGc -5'
23368 5' -55.2 NC_005259.1 + 44157 0.7 0.537112
Target:  5'- gUGCgGUcGAGcagCGC-GCCGGUGUCGg -3'
miRNA:   3'- gACGgCA-CUCaa-GCGuCGGCUACAGC- -5'
23368 5' -55.2 NC_005259.1 + 8191 0.68 0.655126
Target:  5'- cCUGCCGUuua--CGCGcCCGAUGUCGg -3'
miRNA:   3'- -GACGGCAcucaaGCGUcGGCUACAGC- -5'
23368 5' -55.2 NC_005259.1 + 32988 0.68 0.68739
Target:  5'- aUGCCGaGGGUgcCGCcacGcCCGAUGUCGg -3'
miRNA:   3'- gACGGCaCUCAa-GCGu--C-GGCUACAGC- -5'
23368 5' -55.2 NC_005259.1 + 42944 0.68 0.68739
Target:  5'- -cGCCGUGGGcgagGCcGCCGuUGUCGa -3'
miRNA:   3'- gaCGGCACUCaag-CGuCGGCuACAGC- -5'
23368 5' -55.2 NC_005259.1 + 46040 0.67 0.70866
Target:  5'- uCUG-CGUGAccUCGUAGCCGAUGg-- -3'
miRNA:   3'- -GACgGCACUcaAGCGUCGGCUACagc -5'
23368 5' -55.2 NC_005259.1 + 58198 0.67 0.739994
Target:  5'- -cGCCGUGGGcuu---GCCGGUGUCa -3'
miRNA:   3'- gaCGGCACUCaagcguCGGCUACAGc -5'
23368 5' -55.2 NC_005259.1 + 8701 0.66 0.770381
Target:  5'- -cGCUGUcGAGgucgUCGCGGUCaagcGUGUCGg -3'
miRNA:   3'- gaCGGCA-CUCa---AGCGUCGGc---UACAGC- -5'
23368 5' -55.2 NC_005259.1 + 28752 0.66 0.789968
Target:  5'- -cGCCcgagcGUGAGaUCGUcGCCGGUGcCGa -3'
miRNA:   3'- gaCGG-----CACUCaAGCGuCGGCUACaGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.