miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23370 3' -50.3 NC_005259.1 + 16515 0.67 0.919444
Target:  5'- gAGCGAGgcGCUGCGagcgucGCucaagGGUGCg -3'
miRNA:   3'- gUUGCUCuuCGAUGCguua--CG-----CCACG- -5'
23370 3' -50.3 NC_005259.1 + 57018 0.67 0.913084
Target:  5'- uCAGCGc--GGCUcgGCGCGGUGgGGUcGCa -3'
miRNA:   3'- -GUUGCucuUCGA--UGCGUUACgCCA-CG- -5'
23370 3' -50.3 NC_005259.1 + 51864 0.68 0.899502
Target:  5'- -cACGAGcucAGGCUAcCGCGAgGUGGUGa -3'
miRNA:   3'- guUGCUC---UUCGAU-GCGUUaCGCCACg -5'
23370 3' -50.3 NC_005259.1 + 26353 0.68 0.884798
Target:  5'- --uCGGGccGAGCUGCGCGuagAUGuCGGUGg -3'
miRNA:   3'- guuGCUC--UUCGAUGCGU---UAC-GCCACg -5'
23370 3' -50.3 NC_005259.1 + 33715 0.68 0.884034
Target:  5'- gGACG-GAuuCUGCGCGAUgaugucgcguggaGCGGUGUg -3'
miRNA:   3'- gUUGCuCUucGAUGCGUUA-------------CGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 836 0.68 0.877036
Target:  5'- -cACGAGAccaaggucGCUGCGCAggccgaGUGCGagcGUGCg -3'
miRNA:   3'- guUGCUCUu-------CGAUGCGU------UACGC---CACG- -5'
23370 3' -50.3 NC_005259.1 + 4270 0.69 0.868192
Target:  5'- aCAACGGGcGGCUGCGCugccacgagcacgGAccgGCGGcccUGCg -3'
miRNA:   3'- -GUUGCUCuUCGAUGCG-------------UUa--CGCC---ACG- -5'
23370 3' -50.3 NC_005259.1 + 38223 0.69 0.852188
Target:  5'- aCAGCGAGAAGUaGCGUGGaucaGCgauGGUGCc -3'
miRNA:   3'- -GUUGCUCUUCGaUGCGUUa---CG---CCACG- -5'
23370 3' -50.3 NC_005259.1 + 10226 0.7 0.825169
Target:  5'- -cACGAGAuGGCgcucacugaGCAcgGCGGUGUg -3'
miRNA:   3'- guUGCUCU-UCGaug------CGUuaCGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 31231 0.7 0.806075
Target:  5'- cCGAUGAGAccaUUGgGCGcgGCGGUGCc -3'
miRNA:   3'- -GUUGCUCUuc-GAUgCGUuaCGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 19574 0.7 0.806075
Target:  5'- aCAGCGccgcauacuGGAAGCUGCaCAuucaacGUGCGGUGg -3'
miRNA:   3'- -GUUGC---------UCUUCGAUGcGU------UACGCCACg -5'
23370 3' -50.3 NC_005259.1 + 981 0.7 0.796236
Target:  5'- gCGACGAGAcaccGGCa--GCcGUGUGGUGUa -3'
miRNA:   3'- -GUUGCUCU----UCGaugCGuUACGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 24231 0.71 0.744583
Target:  5'- cCGGCGGGGccgaGGC-ACGCGAguucgGCGaGUGCg -3'
miRNA:   3'- -GUUGCUCU----UCGaUGCGUUa----CGC-CACG- -5'
23370 3' -50.3 NC_005259.1 + 49350 0.73 0.666476
Target:  5'- aGGCGAGAGGUgccGCGCGAUGaagaggcCGGUGa -3'
miRNA:   3'- gUUGCUCUUCGa--UGCGUUAC-------GCCACg -5'
23370 3' -50.3 NC_005259.1 + 54019 0.73 0.656366
Target:  5'- cCAGCGAc--GCUcggGCGCGGUGCGGUcuGCg -3'
miRNA:   3'- -GUUGCUcuuCGA---UGCGUUACGCCA--CG- -5'
23370 3' -50.3 NC_005259.1 + 67914 0.73 0.645111
Target:  5'- uCGGCGAGGucaAGCgcguagguCGCGAggaugaucuUGCGGUGCg -3'
miRNA:   3'- -GUUGCUCU---UCGau------GCGUU---------ACGCCACG- -5'
23370 3' -50.3 NC_005259.1 + 35656 0.76 0.480179
Target:  5'- uGGCGAGGguGGCcaGCGCGGUgGUGGUGCa -3'
miRNA:   3'- gUUGCUCU--UCGa-UGCGUUA-CGCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.