miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23371 3' -53.9 NC_005259.1 + 66930 0.66 0.860107
Target:  5'- gUGCUCGAcCGGGGUGagcgGGAcaccgGCGAgCu -3'
miRNA:   3'- -ACGAGCU-GUUCCACa---CCUag---CGCUgG- -5'
23371 3' -53.9 NC_005259.1 + 55144 0.66 0.851857
Target:  5'- gGC-CGACAAGGUaGuUGGGUgGCucACCg -3'
miRNA:   3'- aCGaGCUGUUCCA-C-ACCUAgCGc-UGG- -5'
23371 3' -53.9 NC_005259.1 + 67910 0.66 0.842523
Target:  5'- gGuCUCGGCGAGGUcaagcgcGUaGGUCGCGAg- -3'
miRNA:   3'- aC-GAGCUGUUCCA-------CAcCUAGCGCUgg -5'
23371 3' -53.9 NC_005259.1 + 52396 0.67 0.816694
Target:  5'- cUGcCUCGGgccauCGAGGUGUGGG-CGCucGACUc -3'
miRNA:   3'- -AC-GAGCU-----GUUCCACACCUaGCG--CUGG- -5'
23371 3' -53.9 NC_005259.1 + 9779 0.67 0.807406
Target:  5'- gGCUCGACuucugcccGGUGUGcccgcUCGCG-CCa -3'
miRNA:   3'- aCGAGCUGuu------CCACACcu---AGCGCuGG- -5'
23371 3' -53.9 NC_005259.1 + 53006 0.67 0.797939
Target:  5'- uUGcCUCGACuGGGcgcugcgGUGGcgucgaggcAUCGUGACCu -3'
miRNA:   3'- -AC-GAGCUGuUCCa------CACC---------UAGCGCUGG- -5'
23371 3' -53.9 NC_005259.1 + 66000 0.67 0.788303
Target:  5'- cGCUCGACGuGGUGcgcacccUCGgGGCCg -3'
miRNA:   3'- aCGAGCUGUuCCACaccu---AGCgCUGG- -5'
23371 3' -53.9 NC_005259.1 + 10438 0.67 0.788303
Target:  5'- aGCUCGACAucGaGUGGcUCGaCGGCg -3'
miRNA:   3'- aCGAGCUGUucCaCACCuAGC-GCUGg -5'
23371 3' -53.9 NC_005259.1 + 34197 0.67 0.775541
Target:  5'- gGCUCGGCAAcGGUGuUGGuuugaauguccccggCGCuGCCg -3'
miRNA:   3'- aCGAGCUGUU-CCAC-ACCua-------------GCGcUGG- -5'
23371 3' -53.9 NC_005259.1 + 17367 0.68 0.768566
Target:  5'- gGCUCGGCGcuGGUcGUGGucgacUGCGACa -3'
miRNA:   3'- aCGAGCUGUu-CCA-CACCua---GCGCUGg -5'
23371 3' -53.9 NC_005259.1 + 13406 0.68 0.768566
Target:  5'- cGCUCGGCcuuccuGGccgGGGUCGCcGCCg -3'
miRNA:   3'- aCGAGCUGuu----CCacaCCUAGCGcUGG- -5'
23371 3' -53.9 NC_005259.1 + 58560 0.68 0.758485
Target:  5'- gGCUCgGGCGguuGGgccGGAUCGCGGCg -3'
miRNA:   3'- aCGAG-CUGUu--CCacaCCUAGCGCUGg -5'
23371 3' -53.9 NC_005259.1 + 16145 0.71 0.544604
Target:  5'- aUGCaCGACGAGGuUGUGGuguccacuccCGUGGCCg -3'
miRNA:   3'- -ACGaGCUGUUCC-ACACCua--------GCGCUGG- -5'
23371 3' -53.9 NC_005259.1 + 60616 0.72 0.513164
Target:  5'- aGCacaggCGGCGAGGUGUGGAacugCGCGuaguUCg -3'
miRNA:   3'- aCGa----GCUGUUCCACACCUa---GCGCu---GG- -5'
23371 3' -53.9 NC_005259.1 + 57905 0.74 0.433463
Target:  5'- cGCUUGAgAcGGaUGUuGGUCGCGACCa -3'
miRNA:   3'- aCGAGCUgUuCC-ACAcCUAGCGCUGG- -5'
23371 3' -53.9 NC_005259.1 + 60766 0.74 0.424007
Target:  5'- gGCUCGGCGAGGU-UGGGcugCGCGAa- -3'
miRNA:   3'- aCGAGCUGUUCCAcACCUa--GCGCUgg -5'
23371 3' -53.9 NC_005259.1 + 57025 0.76 0.336657
Target:  5'- gGCUCGGCGcGGUG-GGGUCGCacucgucguaGGCCc -3'
miRNA:   3'- aCGAGCUGUuCCACaCCUAGCG----------CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.