miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23372 5' -55.3 NC_005259.1 + 58469 0.67 0.750672
Target:  5'- gCCACC-AGUGcGuGGCugUCGCCGaCGACa -3'
miRNA:   3'- -GGUGGcUCAC-CuUCG--AGUGGCaGCUG- -5'
23372 5' -55.3 NC_005259.1 + 60531 0.68 0.698953
Target:  5'- -gGCCGGGccgGGAcgcAGC-CGCuCGUCGGCa -3'
miRNA:   3'- ggUGGCUCa--CCU---UCGaGUG-GCAGCUG- -5'
23372 5' -55.3 NC_005259.1 + 20492 0.68 0.698953
Target:  5'- aCACCGcccGGcAGCUCAUCGgCGACg -3'
miRNA:   3'- gGUGGCucaCCuUCGAGUGGCaGCUG- -5'
23372 5' -55.3 NC_005259.1 + 59853 0.68 0.676696
Target:  5'- aCACCGAG-GGAucaugcuGGCUCguuguggccgaaACCGggggCGACg -3'
miRNA:   3'- gGUGGCUCaCCU-------UCGAG------------UGGCa---GCUG- -5'
23372 5' -55.3 NC_005259.1 + 41714 0.68 0.667098
Target:  5'- gCCGCCGcauaccggcGGcgGGGAGgaCACCGccUCGACa -3'
miRNA:   3'- -GGUGGC---------UCa-CCUUCgaGUGGC--AGCUG- -5'
23372 5' -55.3 NC_005259.1 + 2735 0.68 0.667098
Target:  5'- aCCACCGAuGccGAGG-UCGCCGUCGuGCa -3'
miRNA:   3'- -GGUGGCU-CacCUUCgAGUGGCAGC-UG- -5'
23372 5' -55.3 NC_005259.1 + 23869 0.68 0.662823
Target:  5'- aCACCGAGUGGAugcgcuauccgcuGccgcccgagccgccGCgccCGCCGUCGAa -3'
miRNA:   3'- gGUGGCUCACCU-------------U--------------CGa--GUGGCAGCUg -5'
23372 5' -55.3 NC_005259.1 + 38640 0.69 0.592115
Target:  5'- aCGCCGAGuUGGcGAaCUCGCCGaaaUCGACc -3'
miRNA:   3'- gGUGGCUC-ACC-UUcGAGUGGC---AGCUG- -5'
23372 5' -55.3 NC_005259.1 + 13430 0.69 0.62423
Target:  5'- gCCGCCGGGgccgcgcuAGGCgUgACCGUCGGCg -3'
miRNA:   3'- -GGUGGCUCacc-----UUCG-AgUGGCAGCUG- -5'
23372 5' -55.3 NC_005259.1 + 40121 0.69 0.62423
Target:  5'- gCGCUc-GUGGAauuggcgggcgAGCUCGCCGUCGGu -3'
miRNA:   3'- gGUGGcuCACCU-----------UCGAGUGGCAGCUg -5'
23372 5' -55.3 NC_005259.1 + 20448 0.69 0.63496
Target:  5'- uCCACgaCGAGccggGGuGGCUCggaugaccGCCGUCGACc -3'
miRNA:   3'- -GGUG--GCUCa---CCuUCGAG--------UGGCAGCUG- -5'
23372 5' -55.3 NC_005259.1 + 48184 0.69 0.645687
Target:  5'- gCCGCCGGGUgucGGAccgGGCaUGCCGUCGu- -3'
miRNA:   3'- -GGUGGCUCA---CCU---UCGaGUGGCAGCug -5'
23372 5' -55.3 NC_005259.1 + 40663 0.69 0.64247
Target:  5'- cUCGCCGAGcagcgcgagcgccuUGGu-GCUCACCGgccCGAUg -3'
miRNA:   3'- -GGUGGCUC--------------ACCuuCGAGUGGCa--GCUG- -5'
23372 5' -55.3 NC_005259.1 + 12050 0.7 0.581463
Target:  5'- cUCACCGAGgccGAGCUCugCGgcaGACa -3'
miRNA:   3'- -GGUGGCUCaccUUCGAGugGCag-CUG- -5'
23372 5' -55.3 NC_005259.1 + 5902 0.7 0.560287
Target:  5'- aCCACguCGAGgucGAGGUgcugcgCACCGUCGACc -3'
miRNA:   3'- -GGUG--GCUCac-CUUCGa-----GUGGCAGCUG- -5'
23372 5' -55.3 NC_005259.1 + 25261 0.71 0.478284
Target:  5'- cCCACCGAGUacGGcacgauGGC-CACCGUgcaCGACa -3'
miRNA:   3'- -GGUGGCUCA--CCu-----UCGaGUGGCA---GCUG- -5'
23372 5' -55.3 NC_005259.1 + 16417 0.72 0.454822
Target:  5'- cCCACCGAgGUGcccgucGAGCggcccaaaccgggCACCGUCGGCa -3'
miRNA:   3'- -GGUGGCU-CACc-----UUCGa------------GUGGCAGCUG- -5'
23372 5' -55.3 NC_005259.1 + 20094 0.72 0.430124
Target:  5'- aCCACCGAcccGUGGuGAGC-CGCCGUCu-- -3'
miRNA:   3'- -GGUGGCU---CACC-UUCGaGUGGCAGcug -5'
23372 5' -55.3 NC_005259.1 + 14036 0.73 0.393718
Target:  5'- aUCAUCGAGcGGcAGCgCAUCGUCGGCg -3'
miRNA:   3'- -GGUGGCUCaCCuUCGaGUGGCAGCUG- -5'
23372 5' -55.3 NC_005259.1 + 6935 0.73 0.384933
Target:  5'- gCCGCCuuGAGgccGAGCUCGCCGcCGACg -3'
miRNA:   3'- -GGUGG--CUCaccUUCGAGUGGCaGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.