Results 41 - 44 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23372 | 5' | -55.3 | NC_005259.1 | + | 34537 | 0.74 | 0.359369 |
Target: 5'- aCCACCGAGgcagccucAGCUUGCCGUCGGg -3' miRNA: 3'- -GGUGGCUCaccu----UCGAGUGGCAGCUg -5' |
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23372 | 5' | -55.3 | NC_005259.1 | + | 22556 | 0.74 | 0.351116 |
Target: 5'- cUCGCCGAGgucaUGGAAGC-CGCCaccgaguacgugGUCGACg -3' miRNA: 3'- -GGUGGCUC----ACCUUCGaGUGG------------CAGCUG- -5' |
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23372 | 5' | -55.3 | NC_005259.1 | + | 21063 | 0.75 | 0.289998 |
Target: 5'- gCCAUCGuGUGGAcGCguaugcCGCUGUCGACg -3' miRNA: 3'- -GGUGGCuCACCUuCGa-----GUGGCAGCUG- -5' |
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23372 | 5' | -55.3 | NC_005259.1 | + | 9825 | 0.76 | 0.282973 |
Target: 5'- aCCGCCGGGUGcGgcGCUgGCCcaaUCGACa -3' miRNA: 3'- -GGUGGCUCAC-CuuCGAgUGGc--AGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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