miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23372 5' -55.3 NC_005259.1 + 21618 0.66 0.778467
Target:  5'- aCCACCGAGgcugugucgcgcGGAGuGUUCGCCGa-GGCu -3'
miRNA:   3'- -GGUGGCUCa-----------CCUU-CGAGUGGCagCUG- -5'
23372 5' -55.3 NC_005259.1 + 22556 0.74 0.351116
Target:  5'- cUCGCCGAGgucaUGGAAGC-CGCCaccgaguacgugGUCGACg -3'
miRNA:   3'- -GGUGGCUC----ACCUUCGaGUGG------------CAGCUG- -5'
23372 5' -55.3 NC_005259.1 + 23869 0.68 0.662823
Target:  5'- aCACCGAGUGGAugcgcuauccgcuGccgcccgagccgccGCgccCGCCGUCGAa -3'
miRNA:   3'- gGUGGCUCACCU-------------U--------------CGa--GUGGCAGCUg -5'
23372 5' -55.3 NC_005259.1 + 25261 0.71 0.478284
Target:  5'- cCCACCGAGUacGGcacgauGGC-CACCGUgcaCGACa -3'
miRNA:   3'- -GGUGGCUCA--CCu-----UCGaGUGGCA---GCUG- -5'
23372 5' -55.3 NC_005259.1 + 26049 0.67 0.740514
Target:  5'- gCCGCCGGGuUGGccauGC-CGCCGcCGAg -3'
miRNA:   3'- -GGUGGCUC-ACCuu--CGaGUGGCaGCUg -5'
23372 5' -55.3 NC_005259.1 + 27916 0.67 0.73437
Target:  5'- aCCGCgCGGGUGGuAgcgguucggcgacccAGCUCGCCGgUGAa -3'
miRNA:   3'- -GGUG-GCUCACC-U---------------UCGAGUGGCaGCUg -5'
23372 5' -55.3 NC_005259.1 + 28523 0.67 0.719899
Target:  5'- cCCGCCGAGgaaGGAuucaagaucauGGC-CACCccguUCGACa -3'
miRNA:   3'- -GGUGGCUCa--CCU-----------UCGaGUGGc---AGCUG- -5'
23372 5' -55.3 NC_005259.1 + 28637 0.66 0.817976
Target:  5'- gCCACCG-GUGccgacaccgccGAGGC-CGCCGUCa-- -3'
miRNA:   3'- -GGUGGCuCAC-----------CUUCGaGUGGCAGcug -5'
23372 5' -55.3 NC_005259.1 + 29350 0.66 0.808839
Target:  5'- aCCACCGAGaccgccgucGAGGCaC-CCGUCGAg -3'
miRNA:   3'- -GGUGGCUCac-------CUUCGaGuGGCAGCUg -5'
23372 5' -55.3 NC_005259.1 + 34537 0.74 0.359369
Target:  5'- aCCACCGAGgcagccucAGCUUGCCGUCGGg -3'
miRNA:   3'- -GGUGGCUCaccu----UCGAGUGGCAGCUg -5'
23372 5' -55.3 NC_005259.1 + 36703 0.66 0.790048
Target:  5'- cCCGCCGAu---GAGCUCguGCCGcUCGACc -3'
miRNA:   3'- -GGUGGCUcaccUUCGAG--UGGC-AGCUG- -5'
23372 5' -55.3 NC_005259.1 + 38640 0.69 0.592115
Target:  5'- aCGCCGAGuUGGcGAaCUCGCCGaaaUCGACc -3'
miRNA:   3'- gGUGGCUC-ACC-UUcGAGUGGC---AGCUG- -5'
23372 5' -55.3 NC_005259.1 + 38684 0.67 0.747636
Target:  5'- gCCGCCGGGUcGAGGUUgGCCaccugagacuguagGUUGACc -3'
miRNA:   3'- -GGUGGCUCAcCUUCGAgUGG--------------CAGCUG- -5'
23372 5' -55.3 NC_005259.1 + 40121 0.69 0.62423
Target:  5'- gCGCUc-GUGGAauuggcgggcgAGCUCGCCGUCGGu -3'
miRNA:   3'- gGUGGcuCACCU-----------UCGAGUGGCAGCUg -5'
23372 5' -55.3 NC_005259.1 + 40663 0.69 0.64247
Target:  5'- cUCGCCGAGcagcgcgagcgccuUGGu-GCUCACCGgccCGAUg -3'
miRNA:   3'- -GGUGGCUC--------------ACCuuCGAGUGGCa--GCUG- -5'
23372 5' -55.3 NC_005259.1 + 41714 0.68 0.667098
Target:  5'- gCCGCCGcauaccggcGGcgGGGAGgaCACCGccUCGACa -3'
miRNA:   3'- -GGUGGC---------UCa-CCUUCgaGUGGC--AGCUG- -5'
23372 5' -55.3 NC_005259.1 + 47168 0.66 0.799527
Target:  5'- aUCACCGuAGcgGcGAAGgUCggcgguGCCGUCGGCg -3'
miRNA:   3'- -GGUGGC-UCa-C-CUUCgAG------UGGCAGCUG- -5'
23372 5' -55.3 NC_005259.1 + 47472 0.67 0.730254
Target:  5'- gCCACCGAG-GuGAucGCgUCACCGaggcgCGGCa -3'
miRNA:   3'- -GGUGGCUCaC-CUu-CG-AGUGGCa----GCUG- -5'
23372 5' -55.3 NC_005259.1 + 48184 0.69 0.645687
Target:  5'- gCCGCCGGGUgucGGAccgGGCaUGCCGUCGu- -3'
miRNA:   3'- -GGUGGCUCA---CCU---UCGaGUGGCAGCug -5'
23372 5' -55.3 NC_005259.1 + 51490 0.66 0.799527
Target:  5'- aCCGCCGGGgauaGGucgacGC-CGCCGaucUCGACg -3'
miRNA:   3'- -GGUGGCUCa---CCuu---CGaGUGGC---AGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.