miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23373 3' -54 NC_005259.1 + 34690 0.66 0.836434
Target:  5'- -gGCGCUGCGGAU-GAUgCCGAC-Ca -3'
miRNA:   3'- gaCGUGACGUUUAcCUGgGGCUGuGc -5'
23373 3' -54 NC_005259.1 + 23733 0.66 0.827504
Target:  5'- gUGCucACgUGgGAcgGcGACCCCGACGCc -3'
miRNA:   3'- gACG--UG-ACgUUuaC-CUGGGGCUGUGc -5'
23373 3' -54 NC_005259.1 + 52992 0.66 0.81837
Target:  5'- gUGCAUUGCGGcaauuGCCUCGACugGg -3'
miRNA:   3'- gACGUGACGUUuacc-UGGGGCUGugC- -5'
23373 3' -54 NC_005259.1 + 46274 0.66 0.8081
Target:  5'- uCUGCGCgagguucUGCAAcagcgGGGCCgCCGugGCu -3'
miRNA:   3'- -GACGUG-------ACGUUua---CCUGG-GGCugUGc -5'
23373 3' -54 NC_005259.1 + 20853 0.67 0.789846
Target:  5'- -cGC-CUGCAA--GGugUUCGACGCGa -3'
miRNA:   3'- gaCGuGACGUUuaCCugGGGCUGUGC- -5'
23373 3' -54 NC_005259.1 + 50517 0.67 0.779997
Target:  5'- gUGCGCUGC------ACCUCGACGCGc -3'
miRNA:   3'- gACGUGACGuuuaccUGGGGCUGUGC- -5'
23373 3' -54 NC_005259.1 + 51280 0.67 0.779997
Target:  5'- gUGCGCgGCAAGcGGcaGCgCCCGACAUc -3'
miRNA:   3'- gACGUGaCGUUUaCC--UG-GGGCUGUGc -5'
23373 3' -54 NC_005259.1 + 17034 0.67 0.779004
Target:  5'- -gGCGCUGgcaucgaCAAccGcGACCCCGAgGCGg -3'
miRNA:   3'- gaCGUGAC-------GUUuaC-CUGGGGCUgUGC- -5'
23373 3' -54 NC_005259.1 + 32599 0.68 0.718106
Target:  5'- -cGCGCgUGCA---GGACgCCGACACc -3'
miRNA:   3'- gaCGUG-ACGUuuaCCUGgGGCUGUGc -5'
23373 3' -54 NC_005259.1 + 10036 0.68 0.70743
Target:  5'- --cCACgaccuCGAAUGaGACCCCGACACa -3'
miRNA:   3'- gacGUGac---GUUUAC-CUGGGGCUGUGc -5'
23373 3' -54 NC_005259.1 + 13206 0.69 0.642217
Target:  5'- -aGCACaGCGgggccagcGGUGGGCCUCGAC-CGg -3'
miRNA:   3'- gaCGUGaCGU--------UUACCUGGGGCUGuGC- -5'
23373 3' -54 NC_005259.1 + 65782 0.7 0.631257
Target:  5'- -cGCAgUGCGccAUGG-CCUCGACGCGc -3'
miRNA:   3'- gaCGUgACGUu-UACCuGGGGCUGUGC- -5'
23373 3' -54 NC_005259.1 + 24791 0.7 0.576649
Target:  5'- aUGCGCaGCAGGgccaagaccgaGGuGCCCCGGCACGc -3'
miRNA:   3'- gACGUGaCGUUUa----------CC-UGGGGCUGUGC- -5'
23373 3' -54 NC_005259.1 + 18202 0.71 0.533721
Target:  5'- -cGCACccaaGCAGGUcGACCCCGAuCACGc -3'
miRNA:   3'- gaCGUGa---CGUUUAcCUGGGGCU-GUGC- -5'
23373 3' -54 NC_005259.1 + 50024 0.71 0.523158
Target:  5'- -gGCGCUGCGuaauccgcuGUGG-CCUCGACACc -3'
miRNA:   3'- gaCGUGACGUu--------UACCuGGGGCUGUGc -5'
23373 3' -54 NC_005259.1 + 27357 0.73 0.413507
Target:  5'- -cGUACUGaucgggcuUGGugCCCGGCACGg -3'
miRNA:   3'- gaCGUGACguuu----ACCugGGGCUGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.