miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23374 3' -57 NC_005259.1 + 129 0.66 0.696198
Target:  5'- uCAUCGAGGccaaCGGCaagaccuacuGGGCuCGCCCGg -3'
miRNA:   3'- -GUAGCUCUuucaGCCG----------CUCG-GCGGGC- -5'
23374 3' -57 NC_005259.1 + 5061 0.67 0.664531
Target:  5'- gGUCGAGAucgugggccGGGUCGaCGGGCCGgugucaCCGg -3'
miRNA:   3'- gUAGCUCU---------UUCAGCcGCUCGGCg-----GGC- -5'
23374 3' -57 NC_005259.1 + 5741 0.71 0.420171
Target:  5'- -cUCGcGGccAAG-CGGCGAGCUGCCUGa -3'
miRNA:   3'- guAGCuCU--UUCaGCCGCUCGGCGGGC- -5'
23374 3' -57 NC_005259.1 + 6657 0.75 0.250378
Target:  5'- gGUCGAGGGuGUCcgugacgcGCGAGCUGCCCGc -3'
miRNA:   3'- gUAGCUCUUuCAGc-------CGCUCGGCGGGC- -5'
23374 3' -57 NC_005259.1 + 7162 0.71 0.429384
Target:  5'- gGUCGAGGAccacgaGGgcacCGGCGAG-UGCCCGg -3'
miRNA:   3'- gUAGCUCUU------UCa---GCCGCUCgGCGGGC- -5'
23374 3' -57 NC_005259.1 + 8385 0.74 0.283299
Target:  5'- gCAUCGGcGAGAGccUCGGCGAGCCgGgCCa -3'
miRNA:   3'- -GUAGCU-CUUUC--AGCCGCUCGG-CgGGc -5'
23374 3' -57 NC_005259.1 + 9562 0.66 0.696198
Target:  5'- -cUCGAccgcGUCGGCGAGgUGCUCGu -3'
miRNA:   3'- guAGCUcuuuCAGCCGCUCgGCGGGC- -5'
23374 3' -57 NC_005259.1 + 10769 0.66 0.696198
Target:  5'- uGUCGGGcgGGUCaucgaGGUGGGCCGCg-- -3'
miRNA:   3'- gUAGCUCuuUCAG-----CCGCUCGGCGggc -5'
23374 3' -57 NC_005259.1 + 12372 0.66 0.706651
Target:  5'- --cCGAGguAGUCGGCGAgaGCgGCaUCGa -3'
miRNA:   3'- guaGCUCuuUCAGCCGCU--CGgCG-GGC- -5'
23374 3' -57 NC_005259.1 + 18684 0.7 0.441537
Target:  5'- uCAUCGAGGGucugcuugagcacGG-CGGUcugaccucgaucaucGGGCCGCCCGg -3'
miRNA:   3'- -GUAGCUCUU-------------UCaGCCG---------------CUCGGCGGGC- -5'
23374 3' -57 NC_005259.1 + 19227 0.72 0.334998
Target:  5'- --gUGGGAcaccGAGUCGGCGAugaucgaugGCCGCCUGc -3'
miRNA:   3'- guaGCUCU----UUCAGCCGCU---------CGGCGGGC- -5'
23374 3' -57 NC_005259.1 + 23027 0.71 0.411078
Target:  5'- uCAUCGAGAucGaacccgaCGaCGAGCUGCCCGg -3'
miRNA:   3'- -GUAGCUCUuuCa------GCcGCUCGGCGGGC- -5'
23374 3' -57 NC_005259.1 + 25431 0.71 0.433103
Target:  5'- gGUCGAGGAaugcgagccguaugaGGUCGGCGAG-CGUCUu -3'
miRNA:   3'- gUAGCUCUU---------------UCAGCCGCUCgGCGGGc -5'
23374 3' -57 NC_005259.1 + 27471 0.66 0.696198
Target:  5'- aAUUGGGGccgGGGUCGGUGuGGCCaccGCCCc -3'
miRNA:   3'- gUAGCUCU---UUCAGCCGC-UCGG---CGGGc -5'
23374 3' -57 NC_005259.1 + 28893 0.67 0.632608
Target:  5'- uCGUCaagcAGAuuGUCGGCGAcgaggaacGCCGCCUc -3'
miRNA:   3'- -GUAGc---UCUuuCAGCCGCU--------CGGCGGGc -5'
23374 3' -57 NC_005259.1 + 28961 0.67 0.643262
Target:  5'- gCAUCGccGAGGUCGGUGccgaGGCCgcgagcGCCCGc -3'
miRNA:   3'- -GUAGCucUUUCAGCCGC----UCGG------CGGGC- -5'
23374 3' -57 NC_005259.1 + 29399 0.66 0.696198
Target:  5'- aCAcCGAGGGccUCGGCGAGCuCGUgCGc -3'
miRNA:   3'- -GUaGCUCUUucAGCCGCUCG-GCGgGC- -5'
23374 3' -57 NC_005259.1 + 29888 0.66 0.681469
Target:  5'- uGUCGA---GGUCGGCaagcacaagggguGGCUGCCCGa -3'
miRNA:   3'- gUAGCUcuuUCAGCCGc------------UCGGCGGGC- -5'
23374 3' -57 NC_005259.1 + 31067 0.68 0.548068
Target:  5'- aGUUGAucGGGUCGGCGAGgUuCCCGa -3'
miRNA:   3'- gUAGCUcuUUCAGCCGCUCgGcGGGC- -5'
23374 3' -57 NC_005259.1 + 31096 0.73 0.297396
Target:  5'- gCGUCGGGGAucAGUCcGaUGAGUCGCCCGa -3'
miRNA:   3'- -GUAGCUCUU--UCAGcC-GCUCGGCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.