miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23376 3' -51.4 NC_005259.1 + 57861 0.72 0.638088
Target:  5'- cACGACgGUGCGacacccucgauGUGGCGguGCGCGAc -3'
miRNA:   3'- cUGCUGaUACGC-----------CAUCGCuuUGCGCU- -5'
23376 3' -51.4 NC_005259.1 + 41117 0.66 0.930919
Target:  5'- uGACGAUgucgGCGGUGcccGCGucGCGCa- -3'
miRNA:   3'- -CUGCUGaua-CGCCAU---CGCuuUGCGcu -5'
23376 3' -51.4 NC_005259.1 + 18358 0.66 0.927521
Target:  5'- cGGCGACaUGUggcacaugcccgaggGCGGUAGCGAGGgaGaCGAg -3'
miRNA:   3'- -CUGCUG-AUA---------------CGCCAUCGCUUUg-C-GCU- -5'
23376 3' -51.4 NC_005259.1 + 51260 0.66 0.9252
Target:  5'- uGCGGCUc-GCGGUGGUcacGguGCGCGGc -3'
miRNA:   3'- cUGCUGAuaCGCCAUCG---CuuUGCGCU- -5'
23376 3' -51.4 NC_005259.1 + 37083 0.67 0.899518
Target:  5'- cACGcACcg-GCGGUGGUGuAGACGCGu -3'
miRNA:   3'- cUGC-UGauaCGCCAUCGC-UUUGCGCu -5'
23376 3' -51.4 NC_005259.1 + 53011 0.68 0.861325
Target:  5'- -uCGACUGggcgcUGCGGUGGCGucgaggcauCGUGAc -3'
miRNA:   3'- cuGCUGAU-----ACGCCAUCGCuuu------GCGCU- -5'
23376 3' -51.4 NC_005259.1 + 27094 0.69 0.835433
Target:  5'- cGGCGGCUgccAUGCGGUGggcuGUGucAUGCGGa -3'
miRNA:   3'- -CUGCUGA---UACGCCAU----CGCuuUGCGCU- -5'
23376 3' -51.4 NC_005259.1 + 18784 0.69 0.826354
Target:  5'- gGugGGCaa-GCGGUGGCaGGGACGCc- -3'
miRNA:   3'- -CugCUGauaCGCCAUCG-CUUUGCGcu -5'
23376 3' -51.4 NC_005259.1 + 41492 0.7 0.757564
Target:  5'- cACGAcCUcgGCGGUGGCGGGcagacCGUGGa -3'
miRNA:   3'- cUGCU-GAuaCGCCAUCGCUUu----GCGCU- -5'
23376 3' -51.4 NC_005259.1 + 55337 0.71 0.715128
Target:  5'- uGGCGGCa--GCGGUGGCGAugccgAACGCc- -3'
miRNA:   3'- -CUGCUGauaCGCCAUCGCU-----UUGCGcu -5'
23376 3' -51.4 NC_005259.1 + 3961 0.66 0.936355
Target:  5'- gGGCGAuucuggacCUGaGCGGUcccGCGAGcACGCGAu -3'
miRNA:   3'- -CUGCU--------GAUaCGCCAu--CGCUU-UGCGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.