Results 61 - 75 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23376 | 5' | -60 | NC_005259.1 | + | 20127 | 0.66 | 0.573801 |
Target: 5'- cCGCacugGCUGCCGUCGCGAugaCGGCa---- -3' miRNA: 3'- -GCGg---CGACGGCGGUGCU---GUCGcaucc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 30173 | 0.66 | 0.573801 |
Target: 5'- gGCCGCcacaGCCGCC-CGcACAGCa---- -3' miRNA: 3'- gCGGCGa---CGGCGGuGC-UGUCGcaucc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 50739 | 0.66 | 0.552252 |
Target: 5'- aG-CGCUuccucaaGCCGCCACG-CGGUGUcGGa -3' miRNA: 3'- gCgGCGA-------CGGCGGUGCuGUCGCAuCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 67145 | 0.66 | 0.54309 |
Target: 5'- cCGCUGUgaGCCGCUuguCGAUGGUGgcGGc -3' miRNA: 3'- -GCGGCGa-CGGCGGu--GCUGUCGCauCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 26047 | 0.66 | 0.522917 |
Target: 5'- gCGCCGCcggguuggccaUGCCGCCGCcgaGCAGUcccccgAGGc -3' miRNA: 3'- -GCGGCG-----------ACGGCGGUGc--UGUCGca----UCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 46692 | 0.66 | 0.522917 |
Target: 5'- aGCCGCcGCCGCgucccuCGACGcGCGUGc- -3' miRNA: 3'- gCGGCGaCGGCGgu----GCUGU-CGCAUcc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 5440 | 0.66 | 0.53297 |
Target: 5'- gCGcCCGCUGCCGCCGacaGAUcGCa---- -3' miRNA: 3'- -GC-GGCGACGGCGGUg--CUGuCGcaucc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 10571 | 0.66 | 0.53297 |
Target: 5'- -aUCGC-GCCGCCuCGACGGCGa--- -3' miRNA: 3'- gcGGCGaCGGCGGuGCUGUCGCaucc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 35881 | 0.66 | 0.539034 |
Target: 5'- aGCCGCcGCCGaggcagaCCACGGCGagccauucugcguuGCGcGGGa -3' miRNA: 3'- gCGGCGaCGGC-------GGUGCUGU--------------CGCaUCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 63142 | 0.66 | 0.542075 |
Target: 5'- aGCCGCUGUccuCGcCCACGuugagcagccgccGCAGCGccgccgAGGu -3' miRNA: 3'- gCGGCGACG---GC-GGUGC-------------UGUCGCa-----UCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 54621 | 0.66 | 0.54309 |
Target: 5'- uGCUGauCUGCCGCCcacGCGACAcCG-AGGc -3' miRNA: 3'- gCGGC--GACGGCGG---UGCUGUcGCaUCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 12509 | 0.66 | 0.54309 |
Target: 5'- aGCCGCUggGCCGCU-CGGCuaccCGUAGa -3' miRNA: 3'- gCGGCGA--CGGCGGuGCUGuc--GCAUCc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 60143 | 0.66 | 0.54309 |
Target: 5'- gCGCgGCcuugGCCGCCGCcuCAGCGgccucacGGGc -3' miRNA: 3'- -GCGgCGa---CGGCGGUGcuGUCGCa------UCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 26497 | 0.66 | 0.54309 |
Target: 5'- aCGCCGCgagcucGCCGCC-CGGCgagaagAGCGcGGu -3' miRNA: 3'- -GCGGCGa-----CGGCGGuGCUG------UCGCaUCc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 36775 | 0.66 | 0.573801 |
Target: 5'- gGCgCGUUGCCGCCGuccUGACcgcucGCGUcGGc -3' miRNA: 3'- gCG-GCGACGGCGGU---GCUGu----CGCAuCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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