Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23376 | 5' | -60 | NC_005259.1 | + | 19557 | 0.68 | 0.436341 |
Target: 5'- uGcCCGCaGCCGUCGgGACAGCGc--- -3' miRNA: 3'- gC-GGCGaCGGCGGUgCUGUCGCaucc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 56698 | 0.68 | 0.454894 |
Target: 5'- gGCUGCgagGUgGCCACGAUGGUGUc-- -3' miRNA: 3'- gCGGCGa--CGgCGGUGCUGUCGCAucc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 42494 | 0.68 | 0.454894 |
Target: 5'- aGCCGUgacCCGUC-CGGCGGUGUGGc -3' miRNA: 3'- gCGGCGac-GGCGGuGCUGUCGCAUCc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 44239 | 0.67 | 0.464329 |
Target: 5'- cCGCCGC-GCCGCCcgcgcGCGAgaaguCGGCGacaucgAGGc -3' miRNA: 3'- -GCGGCGaCGGCGG-----UGCU-----GUCGCa-----UCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 15301 | 0.67 | 0.464329 |
Target: 5'- cCGCCGaccucGCCGCCcacggucuCGACGGCGguacuGGu -3' miRNA: 3'- -GCGGCga---CGGCGGu-------GCUGUCGCau---CC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 13420 | 0.67 | 0.464329 |
Target: 5'- gGCCGgggucGCCGCCGgGGCcGCGcUAGGc -3' miRNA: 3'- gCGGCga---CGGCGGUgCUGuCGC-AUCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 47967 | 0.67 | 0.473865 |
Target: 5'- cCGCCGC-GCCGCCcGCGaauaugccggGCAGCGc--- -3' miRNA: 3'- -GCGGCGaCGGCGG-UGC----------UGUCGCaucc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 11447 | 0.67 | 0.484466 |
Target: 5'- cCGCuCGCUGCCGCCggugccuaucgucucGCagaucgaguagagaGACaaguagcugAGCGUAGGu -3' miRNA: 3'- -GCG-GCGACGGCGG---------------UG--------------CUG---------UCGCAUCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 27674 | 0.67 | 0.493225 |
Target: 5'- aGCCauuuGUUGCgCGaCCACGAC-GCGUAGc -3' miRNA: 3'- gCGG----CGACG-GC-GGUGCUGuCGCAUCc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 56887 | 0.67 | 0.493225 |
Target: 5'- aGCCGa--CCGCCAaucGCAGCGUGGc -3' miRNA: 3'- gCGGCgacGGCGGUgc-UGUCGCAUCc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 11542 | 0.67 | 0.50304 |
Target: 5'- aGCCGUUGCCGC-ACGucaGGCGg--- -3' miRNA: 3'- gCGGCGACGGCGgUGCug-UCGCaucc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 59381 | 0.67 | 0.50304 |
Target: 5'- aCGCCGCaccgUGCCuCCGCGcGCgAGCGUGa- -3' miRNA: 3'- -GCGGCG----ACGGcGGUGC-UG-UCGCAUcc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 46692 | 0.66 | 0.522917 |
Target: 5'- aGCCGCcGCCGCgucccuCGACGcGCGUGc- -3' miRNA: 3'- gCGGCGaCGGCGgu----GCUGU-CGCAUcc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 26047 | 0.66 | 0.522917 |
Target: 5'- gCGCCGCcggguuggccaUGCCGCCGCcgaGCAGUcccccgAGGc -3' miRNA: 3'- -GCGGCG-----------ACGGCGGUGc--UGUCGca----UCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 5440 | 0.66 | 0.53297 |
Target: 5'- gCGcCCGCUGCCGCCGacaGAUcGCa---- -3' miRNA: 3'- -GC-GGCGACGGCGGUg--CUGuCGcaucc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 10571 | 0.66 | 0.53297 |
Target: 5'- -aUCGC-GCCGCCuCGACGGCGa--- -3' miRNA: 3'- gcGGCGaCGGCGGuGCUGUCGCaucc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 35881 | 0.66 | 0.539034 |
Target: 5'- aGCCGCcGCCGaggcagaCCACGGCGagccauucugcguuGCGcGGGa -3' miRNA: 3'- gCGGCGaCGGC-------GGUGCUGU--------------CGCaUCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 63142 | 0.66 | 0.542075 |
Target: 5'- aGCCGCUGUccuCGcCCACGuugagcagccgccGCAGCGccgccgAGGu -3' miRNA: 3'- gCGGCGACG---GC-GGUGC-------------UGUCGCa-----UCC- -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 12509 | 0.66 | 0.54309 |
Target: 5'- aGCCGCUggGCCGCU-CGGCuaccCGUAGa -3' miRNA: 3'- gCGGCGA--CGGCGGuGCUGuc--GCAUCc -5' |
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23376 | 5' | -60 | NC_005259.1 | + | 60143 | 0.66 | 0.54309 |
Target: 5'- gCGCgGCcuugGCCGCCGCcuCAGCGgccucacGGGc -3' miRNA: 3'- -GCGgCGa---CGGCGGUGcuGUCGCa------UCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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