miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23376 5' -60 NC_005259.1 + 38951 0.74 0.172728
Target:  5'- uGCCGCUGCCGCCgagagccugcACGAUGGCa---- -3'
miRNA:   3'- gCGGCGACGGCGG----------UGCUGUCGcaucc -5'
23376 5' -60 NC_005259.1 + 26280 0.75 0.159831
Target:  5'- uCGCCGgUGCCGCCcuCGACGG-GUAcGGg -3'
miRNA:   3'- -GCGGCgACGGCGGu-GCUGUCgCAU-CC- -5'
23376 5' -60 NC_005259.1 + 35643 0.75 0.151721
Target:  5'- cCGCCGCUGCCGCUgGCGAgGGUGg--- -3'
miRNA:   3'- -GCGGCGACGGCGG-UGCUgUCGCaucc -5'
23376 5' -60 NC_005259.1 + 49243 0.77 0.122902
Target:  5'- uCGaCCGCUGCCGUCACGAUuGCGUu-- -3'
miRNA:   3'- -GC-GGCGACGGCGGUGCUGuCGCAucc -5'
23376 5' -60 NC_005259.1 + 19838 0.77 0.104714
Target:  5'- uCGCgGCUGCUGCCGCGcuCGGUGUGGc -3'
miRNA:   3'- -GCGgCGACGGCGGUGCu-GUCGCAUCc -5'
23376 5' -60 NC_005259.1 + 27276 0.71 0.28425
Target:  5'- aCGCCGCcuugaGCCGCCGCuGCAcGCGccGGa -3'
miRNA:   3'- -GCGGCGa----CGGCGGUGcUGU-CGCauCC- -5'
23376 5' -60 NC_005259.1 + 18852 0.71 0.291105
Target:  5'- uCGCCGgUGCCGUgcaACGguuGCGcGCGUGGGa -3'
miRNA:   3'- -GCGGCgACGGCGg--UGC---UGU-CGCAUCC- -5'
23376 5' -60 NC_005259.1 + 7422 0.69 0.375028
Target:  5'- uCGCCGUcggcggUGCCcgcGCCGCauGGCAGCGccgAGGa -3'
miRNA:   3'- -GCGGCG------ACGG---CGGUG--CUGUCGCa--UCC- -5'
23376 5' -60 NC_005259.1 + 34433 0.7 0.350596
Target:  5'- aCGCCccucgaugaGCUGCCGaCCG-GGCAGCGUGu- -3'
miRNA:   3'- -GCGG---------CGACGGC-GGUgCUGUCGCAUcc -5'
23376 5' -60 NC_005259.1 + 12811 0.7 0.350596
Target:  5'- uGUCGCgcGCaCGCgCGCGugAGgGUGGGg -3'
miRNA:   3'- gCGGCGa-CG-GCG-GUGCugUCgCAUCC- -5'
23376 5' -60 NC_005259.1 + 1840 0.7 0.345847
Target:  5'- uCGCCGCUGCCGCCgaggccgagaaagccGCcGCcGCGUuccguaagcAGGc -3'
miRNA:   3'- -GCGGCGACGGCGG---------------UGcUGuCGCA---------UCC- -5'
23376 5' -60 NC_005259.1 + 44650 0.7 0.341925
Target:  5'- uGCCGCcGCCcgacucgaacGCCACaccguugGGCAGCGUGGc -3'
miRNA:   3'- gCGGCGaCGG----------CGGUG-------CUGUCGCAUCc -5'
23376 5' -60 NC_005259.1 + 8351 0.7 0.334947
Target:  5'- aCGCUGCUGCCGgUAuCGcuCGGCGgcGGc -3'
miRNA:   3'- -GCGGCGACGGCgGU-GCu-GUCGCauCC- -5'
23376 5' -60 NC_005259.1 + 58478 0.7 0.327316
Target:  5'- gCGUgGCUGUCGCCgACGACAucgaccucGCGgucUAGGg -3'
miRNA:   3'- -GCGgCGACGGCGG-UGCUGU--------CGC---AUCC- -5'
23376 5' -60 NC_005259.1 + 45314 0.7 0.319815
Target:  5'- aCGCCGagGCCGCCGcCGAacuGCGUGGc -3'
miRNA:   3'- -GCGGCgaCGGCGGU-GCUgu-CGCAUCc -5'
23376 5' -60 NC_005259.1 + 29929 0.7 0.319815
Target:  5'- uCGaCGCgugGCCGCCACGcggcccggucGCGGCugGUGGGg -3'
miRNA:   3'- -GCgGCGa--CGGCGGUGC----------UGUCG--CAUCC- -5'
23376 5' -60 NC_005259.1 + 60298 0.7 0.312443
Target:  5'- uCGUCGgUGCgGCCACGgACGGCGaaaccGGGc -3'
miRNA:   3'- -GCGGCgACGgCGGUGC-UGUCGCa----UCC- -5'
23376 5' -60 NC_005259.1 + 45644 0.7 0.312443
Target:  5'- gCGCCGgUGCCGCCGUGaACAccgccguccGCGUAGu -3'
miRNA:   3'- -GCGGCgACGGCGGUGC-UGU---------CGCAUCc -5'
23376 5' -60 NC_005259.1 + 41706 0.7 0.312443
Target:  5'- gGCaUGCaGCCGCCGCauaccGGCGGCGgggAGGa -3'
miRNA:   3'- gCG-GCGaCGGCGGUG-----CUGUCGCa--UCC- -5'
23376 5' -60 NC_005259.1 + 8841 0.71 0.298088
Target:  5'- gCGCUGC-GCCGaCCACcACAGCGUGc- -3'
miRNA:   3'- -GCGGCGaCGGC-GGUGcUGUCGCAUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.