miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23377 5' -59.5 NC_005259.1 + 51441 0.66 0.572851
Target:  5'- gGGCCACgGgGCCUcgcgccgauaGAgCUUGUUGCCCu -3'
miRNA:   3'- -CCGGUGgC-UGGA----------CUaGAGCGACGGGc -5'
23377 5' -59.5 NC_005259.1 + 65794 0.66 0.572851
Target:  5'- uGGCC-UCGACgcgCUGGUCgaaaCGCUGgCCGu -3'
miRNA:   3'- -CCGGuGGCUG---GACUAGa---GCGACgGGC- -5'
23377 5' -59.5 NC_005259.1 + 66858 0.66 0.572851
Target:  5'- gGGCCACCGAUC-GGcCUUGUUcGCaCCGc -3'
miRNA:   3'- -CCGGUGGCUGGaCUaGAGCGA-CG-GGC- -5'
23377 5' -59.5 NC_005259.1 + 3741 0.66 0.572851
Target:  5'- cGGUCGCaCGACCUaucaGGUCgacaGC-GCCCGc -3'
miRNA:   3'- -CCGGUG-GCUGGA----CUAGag--CGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 29875 0.66 0.576995
Target:  5'- uGCCACCGcCCgaugucgaGGUCggcaagcacaaggggUgGCUGCCCGa -3'
miRNA:   3'- cCGGUGGCuGGa-------CUAG---------------AgCGACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 7921 0.66 0.583222
Target:  5'- uGCCGCC--CUUGGUCUCGUggGCCUu -3'
miRNA:   3'- cCGGUGGcuGGACUAGAGCGa-CGGGc -5'
23377 5' -59.5 NC_005259.1 + 58589 0.66 0.583222
Target:  5'- cGGCUGCCgGGCCgGAUCUUuucgaGC-GCCUGg -3'
miRNA:   3'- -CCGGUGG-CUGGaCUAGAG-----CGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 66638 0.66 0.583222
Target:  5'- uGGCCACCGcUCgGA--UUGCUGCCgGu -3'
miRNA:   3'- -CCGGUGGCuGGaCUagAGCGACGGgC- -5'
23377 5' -59.5 NC_005259.1 + 22612 0.66 0.583222
Target:  5'- cGCCGCCGACCgccgcccGAUCaucuUCGCcGCgUCGg -3'
miRNA:   3'- cCGGUGGCUGGa------CUAG----AGCGaCG-GGC- -5'
23377 5' -59.5 NC_005259.1 + 38682 0.66 0.589463
Target:  5'- uGGCCGCCGggucgagguuggccACCUGAgaCUguagguugaccacCGCUGCCg- -3'
miRNA:   3'- -CCGGUGGC--------------UGGACUa-GA-------------GCGACGGgc -5'
23377 5' -59.5 NC_005259.1 + 33623 0.66 0.59363
Target:  5'- cGGCCACCGAaaCUGuugcgaaUCGC-GCUCGg -3'
miRNA:   3'- -CCGGUGGCUg-GACuag----AGCGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 36671 0.66 0.59363
Target:  5'- cGCCGCCGccGCCggGGUCUUGaccguccucGCCCGc -3'
miRNA:   3'- cCGGUGGC--UGGa-CUAGAGCga-------CGGGC- -5'
23377 5' -59.5 NC_005259.1 + 9532 0.7 0.341181
Target:  5'- cGCCGCCGggucACCgGAga--GCUGCCCGg -3'
miRNA:   3'- cCGGUGGC----UGGaCUagagCGACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 1827 0.73 0.221123
Target:  5'- -cCCGCCGACCUGcUCgcCGCUGCCg- -3'
miRNA:   3'- ccGGUGGCUGGACuAGa-GCGACGGgc -5'
23377 5' -59.5 NC_005259.1 + 22443 0.73 0.232451
Target:  5'- gGGCCAUCGACuCUGGcuacCUCGUgcGCCCGc -3'
miRNA:   3'- -CCGGUGGCUG-GACUa---GAGCGa-CGGGC- -5'
23377 5' -59.5 NC_005259.1 + 30362 0.73 0.232451
Target:  5'- uGGaCGCCGAUCUGcc--CGCUGCCCGg -3'
miRNA:   3'- -CCgGUGGCUGGACuagaGCGACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 53524 0.73 0.238296
Target:  5'- uGGCCAgCGGCacgGG-CUCGgUGCCCGg -3'
miRNA:   3'- -CCGGUgGCUGga-CUaGAGCgACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 46552 0.72 0.272664
Target:  5'- uGGUCGCCGACCgcgccuaUGGUCgcggcgucgaccgCGCcGCCCGa -3'
miRNA:   3'- -CCGGUGGCUGG-------ACUAGa------------GCGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 19059 0.72 0.275978
Target:  5'- cGCCACCGAUgUcGGUgUCGCgGUCCGg -3'
miRNA:   3'- cCGGUGGCUGgA-CUAgAGCGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 42955 0.71 0.280671
Target:  5'- aGGCCGCCGuugucgaacgggauGCCgggGAUCaUCGUUGCCg- -3'
miRNA:   3'- -CCGGUGGC--------------UGGa--CUAG-AGCGACGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.