miRNA display CGI


Results 41 - 60 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23377 5' -59.5 NC_005259.1 + 46818 0.66 0.562524
Target:  5'- -aCCACCGgccACCUGAgugagCgccccggcgaGCUGCCCGa -3'
miRNA:   3'- ccGGUGGC---UGGACUa----Gag--------CGACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 46948 0.7 0.333414
Target:  5'- cGCCGCCGACCgcguUGAgCUUGUUGgCCa -3'
miRNA:   3'- cCGGUGGCUGG----ACUaGAGCGACgGGc -5'
23377 5' -59.5 NC_005259.1 + 49101 0.7 0.341181
Target:  5'- uGGCCGCCcGCCggGAUCUcaagaCGCUGaucaCCGg -3'
miRNA:   3'- -CCGGUGGcUGGa-CUAGA-----GCGACg---GGC- -5'
23377 5' -59.5 NC_005259.1 + 49679 0.68 0.463024
Target:  5'- cGGCCugguagUCGGCCUcGcgCUCGCUGUCgGu -3'
miRNA:   3'- -CCGGu-----GGCUGGA-CuaGAGCGACGGgC- -5'
23377 5' -59.5 NC_005259.1 + 51441 0.66 0.572851
Target:  5'- gGGCCACgGgGCCUcgcgccgauaGAgCUUGUUGCCCu -3'
miRNA:   3'- -CCGGUGgC-UGGA----------CUaGAGCGACGGGc -5'
23377 5' -59.5 NC_005259.1 + 53155 0.67 0.510781
Target:  5'- aGCCGCUacgccgaGGCC-GAUCUCGCcaccgccGCCCGu -3'
miRNA:   3'- cCGGUGG-------CUGGaCUAGAGCGa------CGGGC- -5'
23377 5' -59.5 NC_005259.1 + 53524 0.73 0.238296
Target:  5'- uGGCCAgCGGCacgGG-CUCGgUGCCCGg -3'
miRNA:   3'- -CCGGUgGCUGga-CUaGAGCgACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 54758 0.71 0.289556
Target:  5'- aGGCCGCCGACCcaaacCUUGCuuaUGCCUGc -3'
miRNA:   3'- -CCGGUGGCUGGacua-GAGCG---ACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 55910 0.66 0.552248
Target:  5'- gGGUCGCUGGCCaGAccgCUgGuCUGCUCGg -3'
miRNA:   3'- -CCGGUGGCUGGaCUa--GAgC-GACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 56114 0.71 0.29654
Target:  5'- uGGCCACCGAaaCUGugugCGCUGCCgGu -3'
miRNA:   3'- -CCGGUGGCUg-GACuagaGCGACGGgC- -5'
23377 5' -59.5 NC_005259.1 + 56238 0.71 0.304372
Target:  5'- cGCCGCCGACCacguuggGAUCggcggccuugagcgcCGCcGCCCGg -3'
miRNA:   3'- cCGGUGGCUGGa------CUAGa--------------GCGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 56384 0.68 0.434967
Target:  5'- gGGCCGCguCGGCUgaucGUCUCGauggUGCCCGg -3'
miRNA:   3'- -CCGGUG--GCUGGac--UAGAGCg---ACGGGC- -5'
23377 5' -59.5 NC_005259.1 + 58589 0.66 0.583222
Target:  5'- cGGCUGCCgGGCCgGAUCUUuucgaGC-GCCUGg -3'
miRNA:   3'- -CCGGUGG-CUGGaCUAGAG-----CGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 61956 0.71 0.289556
Target:  5'- gGGCCACCGcaGCCUcacGcgC-CGCUGCCuCGa -3'
miRNA:   3'- -CCGGUGGC--UGGA---CuaGaGCGACGG-GC- -5'
23377 5' -59.5 NC_005259.1 + 63559 0.68 0.472586
Target:  5'- cGGCCACCGACgCgacgagcggGAUauaCGCcGCCUGg -3'
miRNA:   3'- -CCGGUGGCUG-Ga--------CUAga-GCGaCGGGC- -5'
23377 5' -59.5 NC_005259.1 + 63616 0.74 0.187038
Target:  5'- cGGCCACCGacGCCUGAuagaUCaucguggcgagcugcUCGCUGgCCGg -3'
miRNA:   3'- -CCGGUGGC--UGGACU----AG---------------AGCGACgGGC- -5'
23377 5' -59.5 NC_005259.1 + 63679 0.7 0.325778
Target:  5'- cGGgCACCGgcgcGCCgggGAUCUgCGCcUGCCCa -3'
miRNA:   3'- -CCgGUGGC----UGGa--CUAGA-GCG-ACGGGc -5'
23377 5' -59.5 NC_005259.1 + 63793 0.68 0.463024
Target:  5'- uGGCCGCguuCUUGAUCUUGCgugugGUCCGc -3'
miRNA:   3'- -CCGGUGgcuGGACUAGAGCGa----CGGGC- -5'
23377 5' -59.5 NC_005259.1 + 65794 0.66 0.572851
Target:  5'- uGGCC-UCGACgcgCUGGUCgaaaCGCUGgCCGu -3'
miRNA:   3'- -CCGGuGGCUG---GACUAGa---GCGACgGGC- -5'
23377 5' -59.5 NC_005259.1 + 66289 0.66 0.562524
Target:  5'- cGCCACCauccACuCUGcgCgcaugUGCUGCCCGc -3'
miRNA:   3'- cCGGUGGc---UG-GACuaGa----GCGACGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.