miRNA display CGI


Results 1 - 7 of 7 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23378 5' -56.3 NC_005259.1 + 14074 0.7 0.465245
Target:  5'- cACGGCGGUgGccuACGUGCGcagCGAGGUc -3'
miRNA:   3'- -UGCCGCCAgUuc-UGCACGCa--GCUCUA- -5'
23378 5' -56.3 NC_005259.1 + 8445 0.68 0.567925
Target:  5'- cCGGUGGUCucGGUGUG-GUCGAGGUa -3'
miRNA:   3'- uGCCGCCAGuuCUGCACgCAGCUCUA- -5'
23378 5' -56.3 NC_005259.1 + 7833 0.68 0.578577
Target:  5'- gGCGGCGGUCAccccuuacgGGACGgaccGCGcCGAc-- -3'
miRNA:   3'- -UGCCGCCAGU---------UCUGCa---CGCaGCUcua -5'
23378 5' -56.3 NC_005259.1 + 63309 0.68 0.62153
Target:  5'- aGCGG-GGUCAGGAUGU-CGUUGuAGAUc -3'
miRNA:   3'- -UGCCgCCAGUUCUGCAcGCAGC-UCUA- -5'
23378 5' -56.3 NC_005259.1 + 44154 0.67 0.643094
Target:  5'- aACGuGCGGUCGAGcagcGCGccgGUGUCgGAGAa -3'
miRNA:   3'- -UGC-CGCCAGUUC----UGCa--CGCAG-CUCUa -5'
23378 5' -56.3 NC_005259.1 + 56048 0.66 0.686029
Target:  5'- gGCGGCugcgGGUacuuGAUG-GCGUCGAGAc -3'
miRNA:   3'- -UGCCG----CCAguu-CUGCaCGCAGCUCUa -5'
23378 5' -56.3 NC_005259.1 + 801 0.66 0.7385
Target:  5'- -gGGUGGcCAAGGgGccggGUGUCGAGAc -3'
miRNA:   3'- ugCCGCCaGUUCUgCa---CGCAGCUCUa -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.