Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23379 | 3' | -54.4 | NC_005259.1 | + | 57025 | 0.66 | 0.830203 |
Target: 5'- gGCUcGGCGCgguggGGUCGCacucgucguaGGCCcACA-CCg -3' miRNA: 3'- -CGA-CCGUGa----CCAGCG----------CUGGuUGUaGG- -5' |
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23379 | 3' | -54.4 | NC_005259.1 | + | 8655 | 0.66 | 0.812046 |
Target: 5'- --aGGCugUGGUCgggcugccacGCGGgCAACGgggCCg -3' miRNA: 3'- cgaCCGugACCAG----------CGCUgGUUGUa--GG- -5' |
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23379 | 3' | -54.4 | NC_005259.1 | + | 57914 | 0.66 | 0.812046 |
Target: 5'- --cGGaugUUGGUCGCGACCAGug-CCa -3' miRNA: 3'- cgaCCgu-GACCAGCGCUGGUUguaGG- -5' |
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23379 | 3' | -54.4 | NC_005259.1 | + | 49556 | 0.66 | 0.812046 |
Target: 5'- uGCcgGGCugUucgucGGUCGUGGCCAGa--CCg -3' miRNA: 3'- -CGa-CCGugA-----CCAGCGCUGGUUguaGG- -5' |
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23379 | 3' | -54.4 | NC_005259.1 | + | 66477 | 0.66 | 0.802687 |
Target: 5'- uGgUGGCGgUGGUCuCGAUCAugGgauuUCCu -3' miRNA: 3'- -CgACCGUgACCAGcGCUGGUugU----AGG- -5' |
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23379 | 3' | -54.4 | NC_005259.1 | + | 52932 | 0.67 | 0.793155 |
Target: 5'- -aUGGC-CUGGUCGC--UCAACGcCCg -3' miRNA: 3'- cgACCGuGACCAGCGcuGGUUGUaGG- -5' |
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23379 | 3' | -54.4 | NC_005259.1 | + | 8085 | 0.67 | 0.773611 |
Target: 5'- uGCc-GCGCUGG-CGUGACCGuGCgAUCCu -3' miRNA: 3'- -CGacCGUGACCaGCGCUGGU-UG-UAGG- -5' |
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23379 | 3' | -54.4 | NC_005259.1 | + | 15330 | 0.68 | 0.743257 |
Target: 5'- gGC-GGUACUGGUaaaGgGGCCAAgcugGUCCa -3' miRNA: 3'- -CGaCCGUGACCAg--CgCUGGUUg---UAGG- -5' |
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23379 | 3' | -54.4 | NC_005259.1 | + | 55914 | 0.68 | 0.742226 |
Target: 5'- cGCUGGCcagaccGCUGGUCuGCucggcgaGACCGAgGUUg -3' miRNA: 3'- -CGACCG------UGACCAG-CG-------CUGGUUgUAGg -5' |
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23379 | 3' | -54.4 | NC_005259.1 | + | 66212 | 0.68 | 0.722456 |
Target: 5'- --aGGCGC-GGUCGCG-CCGACGc-- -3' miRNA: 3'- cgaCCGUGaCCAGCGCuGGUUGUagg -5' |
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23379 | 3' | -54.4 | NC_005259.1 | + | 36872 | 0.68 | 0.690627 |
Target: 5'- uGCUGGCACcGccCGCG-CCGACGacgCCg -3' miRNA: 3'- -CGACCGUGaCcaGCGCuGGUUGUa--GG- -5' |
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23379 | 3' | -54.4 | NC_005259.1 | + | 45492 | 0.69 | 0.679894 |
Target: 5'- cGCUGGUGgccUUGGUCGCuguGGCCAccGCG-CCg -3' miRNA: 3'- -CGACCGU---GACCAGCG---CUGGU--UGUaGG- -5' |
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23379 | 3' | -54.4 | NC_005259.1 | + | 15790 | 0.71 | 0.561078 |
Target: 5'- uGCUGGcCGCcgGGaUCGacCGcCCGACAUCCa -3' miRNA: 3'- -CGACC-GUGa-CC-AGC--GCuGGUUGUAGG- -5' |
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23379 | 3' | -54.4 | NC_005259.1 | + | 50241 | 0.71 | 0.539873 |
Target: 5'- cGCgGGCGC-GGaUCGUGGCCAACGggCUa -3' miRNA: 3'- -CGaCCGUGaCC-AGCGCUGGUUGUa-GG- -5' |
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23379 | 3' | -54.4 | NC_005259.1 | + | 1442 | 0.74 | 0.366465 |
Target: 5'- gGCUGGCACUGcUCGCGugCuucGCAcugcacuucUCCc -3' miRNA: 3'- -CGACCGUGACcAGCGCugGu--UGU---------AGG- -5' |
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23379 | 3' | -54.4 | NC_005259.1 | + | 17367 | 0.75 | 0.333446 |
Target: 5'- gGCUcGGCGCUGGUCGUGGUCGACugcgacacugCCg -3' miRNA: 3'- -CGA-CCGUGACCAGCGCUGGUUGua--------GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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