miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23382 5' -55.4 NC_005259.1 + 26445 0.66 0.819384
Target:  5'- aGCGGGCgGg--CCGGUGGgcCGAUGUGGa -3'
miRNA:   3'- -UGCCUGaCaagGGCCGUU--GCUGCACC- -5'
23382 5' -55.4 NC_005259.1 + 63869 0.66 0.819384
Target:  5'- gGCcGGCUGg-CCUuGCGugGGCGUGGa -3'
miRNA:   3'- -UGcCUGACaaGGGcCGUugCUGCACC- -5'
23382 5' -55.4 NC_005259.1 + 27365 0.66 0.782115
Target:  5'- uCGGGCuUGgugCCCGGCAcggugaccgGCGGCGg-- -3'
miRNA:   3'- uGCCUG-ACaa-GGGCCGU---------UGCUGCacc -5'
23382 5' -55.4 NC_005259.1 + 35319 0.67 0.762562
Target:  5'- gGCGGugUGUacgcgacCCCGcGUAGCG-CGUGa -3'
miRNA:   3'- -UGCCugACAa------GGGC-CGUUGCuGCACc -5'
23382 5' -55.4 NC_005259.1 + 34188 0.67 0.732315
Target:  5'- cCGGGCaGUggCUCGGCAACGGUGUuGGu -3'
miRNA:   3'- uGCCUGaCAa-GGGCCGUUGCUGCA-CC- -5'
23382 5' -55.4 NC_005259.1 + 44030 0.67 0.732315
Target:  5'- cGCGGACUGaaCaCCGGCcuUGACGa-- -3'
miRNA:   3'- -UGCCUGACaaG-GGCCGuuGCUGCacc -5'
23382 5' -55.4 NC_005259.1 + 46420 0.68 0.701216
Target:  5'- cCGGGCUGUgcaCCC-GUGACGAUgGUGGc -3'
miRNA:   3'- uGCCUGACAa--GGGcCGUUGCUG-CACC- -5'
23382 5' -55.4 NC_005259.1 + 4100 0.68 0.680151
Target:  5'- -gGGACUGaugccaaacCUCGGCGGCcucGACGUGGc -3'
miRNA:   3'- ugCCUGACaa-------GGGCCGUUG---CUGCACC- -5'
23382 5' -55.4 NC_005259.1 + 20529 0.69 0.648254
Target:  5'- cACGGgugcGCUG--CCC-GCAGCGugGUGGa -3'
miRNA:   3'- -UGCC----UGACaaGGGcCGUUGCugCACC- -5'
23382 5' -55.4 NC_005259.1 + 54502 0.69 0.648254
Target:  5'- gGCGGGCa-----UGGCGGCGAUGUGGg -3'
miRNA:   3'- -UGCCUGacaaggGCCGUUGCUGCACC- -5'
23382 5' -55.4 NC_005259.1 + 23109 0.69 0.647187
Target:  5'- gAUGGucgugauugaucuGCUGU--CCGGCAGCGAUGUGa -3'
miRNA:   3'- -UGCC-------------UGACAagGGCCGUUGCUGCACc -5'
23382 5' -55.4 NC_005259.1 + 34013 0.69 0.637581
Target:  5'- cCGG-CUGUaUCCGGCcucGGCGGCGUGc -3'
miRNA:   3'- uGCCuGACAaGGGCCG---UUGCUGCACc -5'
23382 5' -55.4 NC_005259.1 + 19201 0.69 0.626903
Target:  5'- aGCGaGCUcGUggUgCgGGCGGCGACGUGGg -3'
miRNA:   3'- -UGCcUGA-CA--AgGgCCGUUGCUGCACC- -5'
23382 5' -55.4 NC_005259.1 + 18031 0.72 0.461871
Target:  5'- cUGGACUGacaacCCCGGCGAgccguuugaGGCGUGGa -3'
miRNA:   3'- uGCCUGACaa---GGGCCGUUg--------CUGCACC- -5'
23382 5' -55.4 NC_005259.1 + 67956 0.72 0.452247
Target:  5'- uGCGGguuguGCUGUagCgCGcGCAGCGGCGUGGc -3'
miRNA:   3'- -UGCC-----UGACAa-GgGC-CGUUGCUGCACC- -5'
23382 5' -55.4 NC_005259.1 + 5635 0.72 0.433333
Target:  5'- cCGGAUcGUgCCCGGCGAgGACGgcgGGc -3'
miRNA:   3'- uGCCUGaCAaGGGCCGUUgCUGCa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.