Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23383 | 3' | -55.4 | NC_005259.1 | + | 18971 | 0.69 | 0.58345 |
Target: 5'- -aCCUCGcCGCGUacaUCG-CCCGG-CACg -3' miRNA: 3'- uaGGAGCuGCGCA---AGCuGGGCUaGUG- -5' |
|||||||
23383 | 3' | -55.4 | NC_005259.1 | + | 50526 | 0.69 | 0.615737 |
Target: 5'- -aCCUCGACGCGcUCGcCUCGggCGa -3' miRNA: 3'- uaGGAGCUGCGCaAGCuGGGCuaGUg -5' |
|||||||
23383 | 3' | -55.4 | NC_005259.1 | + | 31018 | 0.68 | 0.669698 |
Target: 5'- uGUCCaC-ACGUGaUCGugCCGAUCACc -3' miRNA: 3'- -UAGGaGcUGCGCaAGCugGGCUAGUG- -5' |
|||||||
23383 | 3' | -55.4 | NC_005259.1 | + | 32869 | 0.68 | 0.680427 |
Target: 5'- -aCCUCGACGCGcgCGGugaUCGAUuCACc -3' miRNA: 3'- uaGGAGCUGCGCaaGCUg--GGCUA-GUG- -5' |
|||||||
23383 | 3' | -55.4 | NC_005259.1 | + | 63994 | 0.66 | 0.7845 |
Target: 5'- uUCCUCG-CGCGUgacggcauaccaccgCG-CCCGAggCGCg -3' miRNA: 3'- uAGGAGCuGCGCAa--------------GCuGGGCUa-GUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home