Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23383 | 3' | -55.4 | NC_005259.1 | + | 29925 | 0.82 | 0.108965 |
Target: 5'- -aCCaUCGACGCGUggccgccacgCGGCCCGGUCGCg -3' miRNA: 3'- uaGG-AGCUGCGCAa---------GCUGGGCUAGUG- -5' |
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23383 | 3' | -55.4 | NC_005259.1 | + | 62983 | 0.79 | 0.164105 |
Target: 5'- cGUCCUCG-CGCG-UCGACUCGAUgGCa -3' miRNA: 3'- -UAGGAGCuGCGCaAGCUGGGCUAgUG- -5' |
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23383 | 3' | -55.4 | NC_005259.1 | + | 26292 | 0.72 | 0.446105 |
Target: 5'- -cCCUCGACGgGUacggggaUCGACCCauacauauccucggGGUCGCa -3' miRNA: 3'- uaGGAGCUGCgCA-------AGCUGGG--------------CUAGUG- -5' |
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23383 | 3' | -55.4 | NC_005259.1 | + | 29229 | 0.72 | 0.44996 |
Target: 5'- -gCCUCGGCGCGUU---CCUGAUCAUc -3' miRNA: 3'- uaGGAGCUGCGCAAgcuGGGCUAGUG- -5' |
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23383 | 3' | -55.4 | NC_005259.1 | + | 29057 | 0.7 | 0.520126 |
Target: 5'- -gCCgCGAgCGCGguaUCGGCCCGAUCuGCg -3' miRNA: 3'- uaGGaGCU-GCGCa--AGCUGGGCUAG-UG- -5' |
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23383 | 3' | -55.4 | NC_005259.1 | + | 57175 | 0.7 | 0.562106 |
Target: 5'- cGUCCUCGcCGCcguaGUUCGGCCCGcgaACc -3' miRNA: 3'- -UAGGAGCuGCG----CAAGCUGGGCuagUG- -5' |
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23383 | 3' | -55.4 | NC_005259.1 | + | 9891 | 0.69 | 0.571688 |
Target: 5'- uUCCUCGcGCGCGacgagcuUUCGGCCC--UCGCg -3' miRNA: 3'- uAGGAGC-UGCGC-------AAGCUGGGcuAGUG- -5' |
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23383 | 3' | -55.4 | NC_005259.1 | + | 18971 | 0.69 | 0.58345 |
Target: 5'- -aCCUCGcCGCGUacaUCG-CCCGG-CACg -3' miRNA: 3'- uaGGAGCuGCGCA---AGCuGGGCUaGUG- -5' |
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23383 | 3' | -55.4 | NC_005259.1 | + | 50526 | 0.69 | 0.615737 |
Target: 5'- -aCCUCGACGCGcUCGcCUCGggCGa -3' miRNA: 3'- uaGGAGCUGCGCaAGCuGGGCuaGUg -5' |
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23383 | 3' | -55.4 | NC_005259.1 | + | 31018 | 0.68 | 0.669698 |
Target: 5'- uGUCCaC-ACGUGaUCGugCCGAUCACc -3' miRNA: 3'- -UAGGaGcUGCGCaAGCugGGCUAGUG- -5' |
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23383 | 3' | -55.4 | NC_005259.1 | + | 32869 | 0.68 | 0.680427 |
Target: 5'- -aCCUCGACGCGcgCGGugaUCGAUuCACc -3' miRNA: 3'- uaGGAGCUGCGCaaGCUg--GGCUA-GUG- -5' |
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23383 | 3' | -55.4 | NC_005259.1 | + | 13130 | 0.67 | 0.691113 |
Target: 5'- -aCCagCGcACgGUGUUCGGCUCGAUCAUg -3' miRNA: 3'- uaGGa-GC-UG-CGCAAGCUGGGCUAGUG- -5' |
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23383 | 3' | -55.4 | NC_005259.1 | + | 55837 | 0.67 | 0.691113 |
Target: 5'- cGUCCUCGACGCGUgugGACUgaaccguggUGAacUCGCc -3' miRNA: 3'- -UAGGAGCUGCGCAag-CUGG---------GCU--AGUG- -5' |
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23383 | 3' | -55.4 | NC_005259.1 | + | 20395 | 0.67 | 0.69856 |
Target: 5'- -gCCUCGACGUagcaagggcaucgaGgUCuACCCGGUCACc -3' miRNA: 3'- uaGGAGCUGCG--------------CaAGcUGGGCUAGUG- -5' |
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23383 | 3' | -55.4 | NC_005259.1 | + | 48493 | 0.67 | 0.710201 |
Target: 5'- uUCCUCGACGCGcuugagggccgCGACuuGccgCACu -3' miRNA: 3'- uAGGAGCUGCGCaa---------GCUGggCua-GUG- -5' |
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23383 | 3' | -55.4 | NC_005259.1 | + | 62036 | 0.67 | 0.712308 |
Target: 5'- -gUgUCGACGUaGUccUCGGCCCGcUCGCg -3' miRNA: 3'- uaGgAGCUGCG-CA--AGCUGGGCuAGUG- -5' |
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23383 | 3' | -55.4 | NC_005259.1 | + | 34383 | 0.67 | 0.722797 |
Target: 5'- -aCCUCGACGCGcaacugcugcUCGACCgGGcugUCAUu -3' miRNA: 3'- uaGGAGCUGCGCa---------AGCUGGgCU---AGUG- -5' |
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23383 | 3' | -55.4 | NC_005259.1 | + | 39550 | 0.67 | 0.722797 |
Target: 5'- -aCCUCGACGUugagccggucGUcCGGCCCGAccUCGa -3' miRNA: 3'- uaGGAGCUGCG----------CAaGCUGGGCU--AGUg -5' |
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23383 | 3' | -55.4 | NC_005259.1 | + | 18284 | 0.67 | 0.732164 |
Target: 5'- -aCCUCGACGCccgacgagccgccGUUCuGCCCGGUgUGCg -3' miRNA: 3'- uaGGAGCUGCG-------------CAAGcUGGGCUA-GUG- -5' |
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23383 | 3' | -55.4 | NC_005259.1 | + | 17027 | 0.67 | 0.7332 |
Target: 5'- cAUCCUCGGCGCuGgcaUCGAcaaccgcgacCCCGAggcggugCGCg -3' miRNA: 3'- -UAGGAGCUGCG-Ca--AGCU----------GGGCUa------GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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