miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23383 5' -58.1 NC_005259.1 + 31248 0.75 0.200604
Target:  5'- -cGCGGCG-GUGCcGCCCCACaCGcCGCa -3'
miRNA:   3'- gaUGCUGCuCACGcUGGGGUG-GC-GCG- -5'
23383 5' -58.1 NC_005259.1 + 31743 0.7 0.446416
Target:  5'- cCUGCcGCGAGcgcugGUGuCCCCACCGCc- -3'
miRNA:   3'- -GAUGcUGCUCa----CGCuGGGGUGGCGcg -5'
23383 5' -58.1 NC_005259.1 + 31799 0.74 0.233375
Target:  5'- -cGCGucgucauCGAGcucgacCGACCCCACCGCGCc -3'
miRNA:   3'- gaUGCu------GCUCac----GCUGGGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 33397 0.81 0.088223
Target:  5'- -cGCGACGAGc-CGugUCCACCGCGCg -3'
miRNA:   3'- gaUGCUGCUCacGCugGGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 33905 0.66 0.669966
Target:  5'- -cGCGACGGGccgaGACCggCCACgGUGCg -3'
miRNA:   3'- gaUGCUGCUCacg-CUGG--GGUGgCGCG- -5'
23383 5' -58.1 NC_005259.1 + 34693 0.67 0.575675
Target:  5'- gCUGCgGAUGA-UGcCGACCauCUGCCGCGCg -3'
miRNA:   3'- -GAUG-CUGCUcAC-GCUGG--GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 35216 0.77 0.154872
Target:  5'- -gGCGGCGAGgaacGUGACCgCCACgCGUGCa -3'
miRNA:   3'- gaUGCUGCUCa---CGCUGG-GGUG-GCGCG- -5'
23383 5' -58.1 NC_005259.1 + 35319 0.71 0.367002
Target:  5'- -gGCGGUGuGUacGCGACCCCGCguaGCGCg -3'
miRNA:   3'- gaUGCUGCuCA--CGCUGGGGUGg--CGCG- -5'
23383 5' -58.1 NC_005259.1 + 35620 0.7 0.409918
Target:  5'- gCUGCGuCGAGUaGUucgGGCCgCCGCCGCuGCc -3'
miRNA:   3'- -GAUGCuGCUCA-CG---CUGG-GGUGGCG-CG- -5'
23383 5' -58.1 NC_005259.1 + 36707 0.67 0.617497
Target:  5'- --cCGAUGAgcucGUGCcGCucgaCCCGCCGCGCc -3'
miRNA:   3'- gauGCUGCU----CACGcUG----GGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 37188 0.72 0.319728
Target:  5'- -gAgGACGAGcUGCGGCCCUugC-CGCc -3'
miRNA:   3'- gaUgCUGCUC-ACGCUGGGGugGcGCG- -5'
23383 5' -58.1 NC_005259.1 + 37754 0.67 0.565307
Target:  5'- -gAUGACcAGcgcgGUGGCCCCugCGgGCa -3'
miRNA:   3'- gaUGCUGcUCa---CGCUGGGGugGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 41114 0.68 0.554988
Target:  5'- gUAUGACGAuGUcgGCgGugCCCGCguCGCGCa -3'
miRNA:   3'- gAUGCUGCU-CA--CG-CugGGGUG--GCGCG- -5'
23383 5' -58.1 NC_005259.1 + 41242 0.67 0.607004
Target:  5'- --gUGACGAuccgGUGCG-CCUCACCGCc- -3'
miRNA:   3'- gauGCUGCU----CACGCuGGGGUGGCGcg -5'
23383 5' -58.1 NC_005259.1 + 41674 0.66 0.649012
Target:  5'- uCUGCacCGcGUGCGuggCCACCGCGCa -3'
miRNA:   3'- -GAUGcuGCuCACGCuggGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 42195 0.69 0.484655
Target:  5'- gCUGCG-CGccGUcGCGAUggaugCCCGCCGCGCc -3'
miRNA:   3'- -GAUGCuGCu-CA-CGCUG-----GGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 42470 0.72 0.334964
Target:  5'- aCUACGGCGAGgccCGGCCCguagaGCCGUGa -3'
miRNA:   3'- -GAUGCUGCUCac-GCUGGGg----UGGCGCg -5'
23383 5' -58.1 NC_005259.1 + 43917 0.69 0.465332
Target:  5'- --uCGAUGGGcaGCGACgaCACCGCGCu -3'
miRNA:   3'- gauGCUGCUCa-CGCUGggGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 44873 0.71 0.383793
Target:  5'- -gGCGGCGAGauccgacGCG-CCCCAcgaguauuuuCCGCGCu -3'
miRNA:   3'- gaUGCUGCUCa------CGCuGGGGU----------GGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 45333 0.7 0.446416
Target:  5'- aCUGCGugGccUGCGccGCCugggCCGCCGCGUa -3'
miRNA:   3'- -GAUGCugCucACGC--UGG----GGUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.