miRNA display CGI


Results 61 - 78 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23383 5' -58.1 NC_005259.1 + 46149 0.68 0.554988
Target:  5'- -aGCGACGAGcaUGuCGAauaccgcuugCCCGCCGgGCg -3'
miRNA:   3'- gaUGCUGCUC--AC-GCUg---------GGGUGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 46309 0.66 0.628002
Target:  5'- gCUGCGuuGuucGCGGCCCCGagggucgcgUCGCGCa -3'
miRNA:   3'- -GAUGCugCucaCGCUGGGGU---------GGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 46365 0.66 0.649012
Target:  5'- -cGCGAUGGcaccgccCGGCCCCaucucacgcaGCCGCGCg -3'
miRNA:   3'- gaUGCUGCUcac----GCUGGGG----------UGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 46673 0.67 0.607004
Target:  5'- uCU-CGGCGAGcucgGCcugaGCCgCCGCCGCGUc -3'
miRNA:   3'- -GAuGCUGCUCa---CGc---UGG-GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 47950 0.71 0.367002
Target:  5'- -gACGGCG-GUGcCGAUggCCGCCGCGCc -3'
miRNA:   3'- gaUGCUGCuCAC-GCUGg-GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 48058 0.71 0.367002
Target:  5'- -cACGGCGGGUaGCG---CCGCCGCGCc -3'
miRNA:   3'- gaUGCUGCUCA-CGCuggGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 48441 0.72 0.31898
Target:  5'- -gGCG-CGAGgcaGCGGCagcgcguUCCACCGCGCg -3'
miRNA:   3'- gaUGCuGCUCa--CGCUG-------GGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 49648 0.68 0.554988
Target:  5'- --uCGGCGAugGCGGCCUCGauaCGCGCc -3'
miRNA:   3'- gauGCUGCUcaCGCUGGGGUg--GCGCG- -5'
23383 5' -58.1 NC_005259.1 + 53687 0.69 0.469165
Target:  5'- -cGCGAUG-GUGCGACCggUcaacgugaacgugguCACCGCGCc -3'
miRNA:   3'- gaUGCUGCuCACGCUGG--G---------------GUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 57861 0.71 0.383793
Target:  5'- -cACGACG-GUGCGACaCCCucgaugugGCgGUGCg -3'
miRNA:   3'- gaUGCUGCuCACGCUG-GGG--------UGgCGCG- -5'
23383 5' -58.1 NC_005259.1 + 58386 0.67 0.575675
Target:  5'- gCUcCGACG-GUGCGcACCagCCACCG-GCg -3'
miRNA:   3'- -GAuGCUGCuCACGC-UGG--GGUGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 60250 0.7 0.401087
Target:  5'- uUGCGuGCGGGUGCaaGGCUggCCACCaGCGCu -3'
miRNA:   3'- gAUGC-UGCUCACG--CUGG--GGUGG-CGCG- -5'
23383 5' -58.1 NC_005259.1 + 61034 0.66 0.678316
Target:  5'- -gGCGGCGAGgucgaccgacggGCGGCUCaccuuguGCCGgGCa -3'
miRNA:   3'- gaUGCUGCUCa-----------CGCUGGGg------UGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 63981 0.67 0.605956
Target:  5'- cCUugGauuugauuuccucGCGcGUGaCGGCauaCCACCGCGCc -3'
miRNA:   3'- -GAugC-------------UGCuCAC-GCUGg--GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 64614 0.68 0.534524
Target:  5'- -gACGGCGAGcGCGACgggcagcagcgCCCACCaaucgaGCGUc -3'
miRNA:   3'- gaUGCUGCUCaCGCUG-----------GGGUGG------CGCG- -5'
23383 5' -58.1 NC_005259.1 + 64766 0.68 0.513332
Target:  5'- -cGCGACG-GUGCGccucggcGgCCCGCUGCGa -3'
miRNA:   3'- gaUGCUGCuCACGC-------UgGGGUGGCGCg -5'
23383 5' -58.1 NC_005259.1 + 66001 0.68 0.544725
Target:  5'- gCU-CGACGuGGUGCGcACCCUcgggGCCGCa- -3'
miRNA:   3'- -GAuGCUGC-UCACGC-UGGGG----UGGCGcg -5'
23383 5' -58.1 NC_005259.1 + 66251 0.74 0.257643
Target:  5'- --uCGACGcAGcGCGGCCCgCGCCGgGCg -3'
miRNA:   3'- gauGCUGC-UCaCGCUGGG-GUGGCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.