miRNA display CGI


Results 41 - 60 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23383 5' -58.1 NC_005259.1 + 28143 0.7 0.437121
Target:  5'- -gGCGAUGAGcUGCccGGCCUCGaCGCGCu -3'
miRNA:   3'- gaUGCUGCUC-ACG--CUGGGGUgGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 28049 0.66 0.63851
Target:  5'- gCUugGGauCGAucUGCGACCCCuGCCGC-Ca -3'
miRNA:   3'- -GAugCU--GCUc-ACGCUGGGG-UGGCGcG- -5'
23383 5' -58.1 NC_005259.1 + 27178 0.69 0.484655
Target:  5'- -gGCGAUGAGcaggcUGCGAcgcuggaacuCCCgCACCGCGa -3'
miRNA:   3'- gaUGCUGCUC-----ACGCU----------GGG-GUGGCGCg -5'
23383 5' -58.1 NC_005259.1 + 26589 0.69 0.49446
Target:  5'- -cGCGAgGGGUuuGCcuuGAUCCaCGCCGCGCc -3'
miRNA:   3'- gaUGCUgCUCA--CG---CUGGG-GUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 24662 0.74 0.264024
Target:  5'- -gACGACGAGcGCGACCCguUCGC-Ca -3'
miRNA:   3'- gaUGCUGCUCaCGCUGGGguGGCGcG- -5'
23383 5' -58.1 NC_005259.1 + 24255 0.67 0.575675
Target:  5'- --uCGGCGAGUGCGugCa---CGCGUg -3'
miRNA:   3'- gauGCUGCUCACGCugGggugGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 23738 0.69 0.484655
Target:  5'- -cACGugGGacgGCGACCCCgacGCCcCGCa -3'
miRNA:   3'- gaUGCugCUca-CGCUGGGG---UGGcGCG- -5'
23383 5' -58.1 NC_005259.1 + 22188 0.69 0.48368
Target:  5'- --uCGugGu-UGCGACCuugcagacguuggCCACCGCGCa -3'
miRNA:   3'- gauGCugCucACGCUGG-------------GGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 22096 0.67 0.592349
Target:  5'- -gAUGGCGGGcaccauuuucgagGuCGACCCCucgaucCCGCGCa -3'
miRNA:   3'- gaUGCUGCUCa------------C-GCUGGGGu-----GGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 21971 0.68 0.534524
Target:  5'- -cGCGugG-GUGuCGuucuCCCCACCG-GCa -3'
miRNA:   3'- gaUGCugCuCAC-GCu---GGGGUGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 21534 0.69 0.465332
Target:  5'- -aGCGGCGAGgacUGcCGACUCagagACCGCGUa -3'
miRNA:   3'- gaUGCUGCUC---AC-GCUGGGg---UGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 21001 0.66 0.63851
Target:  5'- cCUACu-CGGGcgGCGACCCUgACCG-GCa -3'
miRNA:   3'- -GAUGcuGCUCa-CGCUGGGG-UGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 20697 0.66 0.669966
Target:  5'- -cACG-CGcucGGUGguCGAagguuucaCCCCGCCGCGCg -3'
miRNA:   3'- gaUGCuGC---UCAC--GCU--------GGGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 19088 0.66 0.63851
Target:  5'- gCUACGACaAGcUGCGcgaaCUCACCgGCGCu -3'
miRNA:   3'- -GAUGCUGcUC-ACGCug--GGGUGG-CGCG- -5'
23383 5' -58.1 NC_005259.1 + 18959 0.76 0.185769
Target:  5'- -gAgGAUGGG-GUGACCUCGCCGCGUa -3'
miRNA:   3'- gaUgCUGCUCaCGCUGGGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 17569 0.69 0.49446
Target:  5'- --cCGACGAGauccuccCGACgCUGCCGCGCa -3'
miRNA:   3'- gauGCUGCUCac-----GCUGgGGUGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 17175 0.67 0.575675
Target:  5'- -gACGACaAG-GCGGCgCaggaaGCCGCGCg -3'
miRNA:   3'- gaUGCUGcUCaCGCUGgGg----UGGCGCG- -5'
23383 5' -58.1 NC_005259.1 + 14159 0.66 0.63851
Target:  5'- -cGCGuCGuGUG-GAUCUCGCCGgGCg -3'
miRNA:   3'- gaUGCuGCuCACgCUGGGGUGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 13786 0.7 0.446416
Target:  5'- -gGCGACGAgcagugGUGCGACaUCACCG-GCg -3'
miRNA:   3'- gaUGCUGCU------CACGCUGgGGUGGCgCG- -5'
23383 5' -58.1 NC_005259.1 + 13462 0.68 0.554988
Target:  5'- -cGCGGCGc-UG-GugCUCACCGCGCu -3'
miRNA:   3'- gaUGCUGCucACgCugGGGUGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.