Results 61 - 78 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 9900 | 0.68 | 0.524392 |
Target: 5'- -cGCGACGAGcuuuCGGCCCU--CGCGCu -3' miRNA: 3'- gaUGCUGCUCac--GCUGGGGugGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 64766 | 0.68 | 0.513332 |
Target: 5'- -cGCGACG-GUGCGccucggcGgCCCGCUGCGa -3' miRNA: 3'- gaUGCUGCuCACGC-------UgGGGUGGCGCg -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 26589 | 0.69 | 0.49446 |
Target: 5'- -cGCGAgGGGUuuGCcuuGAUCCaCGCCGCGCc -3' miRNA: 3'- gaUGCUgCUCA--CG---CUGGG-GUGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 17569 | 0.69 | 0.49446 |
Target: 5'- --cCGACGAGauccuccCGACgCUGCCGCGCa -3' miRNA: 3'- gauGCUGCUCac-----GCUGgGGUGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 747 | 0.69 | 0.49446 |
Target: 5'- cCUACGcCGccGGUGCcuACCgcguCCACCGCGCc -3' miRNA: 3'- -GAUGCuGC--UCACGc-UGG----GGUGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 42195 | 0.69 | 0.484655 |
Target: 5'- gCUGCG-CGccGUcGCGAUggaugCCCGCCGCGCc -3' miRNA: 3'- -GAUGCuGCu-CA-CGCUG-----GGGUGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 27178 | 0.69 | 0.484655 |
Target: 5'- -gGCGAUGAGcaggcUGCGAcgcuggaacuCCCgCACCGCGa -3' miRNA: 3'- gaUGCUGCUC-----ACGCU----------GGG-GUGGCGCg -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 23738 | 0.69 | 0.484655 |
Target: 5'- -cACGugGGacgGCGACCCCgacGCCcCGCa -3' miRNA: 3'- gaUGCugCUca-CGCUGGGG---UGGcGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 22188 | 0.69 | 0.48368 |
Target: 5'- --uCGugGu-UGCGACCuugcagacguuggCCACCGCGCa -3' miRNA: 3'- gauGCugCucACGCUGG-------------GGUGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 53687 | 0.69 | 0.469165 |
Target: 5'- -cGCGAUG-GUGCGACCggUcaacgugaacgugguCACCGCGCc -3' miRNA: 3'- gaUGCUGCuCACGCUGG--G---------------GUGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 21534 | 0.69 | 0.465332 |
Target: 5'- -aGCGGCGAGgacUGcCGACUCagagACCGCGUa -3' miRNA: 3'- gaUGCUGCUC---AC-GCUGGGg---UGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 43917 | 0.69 | 0.465332 |
Target: 5'- --uCGAUGGGcaGCGACgaCACCGCGCu -3' miRNA: 3'- gauGCUGCUCa-CGCUGggGUGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 7182 | 0.69 | 0.454876 |
Target: 5'- --cCGGCGAGUGCccGGCCUgcggacgCACCGgGCu -3' miRNA: 3'- gauGCUGCUCACG--CUGGG-------GUGGCgCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 13786 | 0.7 | 0.446416 |
Target: 5'- -gGCGACGAgcagugGUGCGACaUCACCG-GCg -3' miRNA: 3'- gaUGCUGCU------CACGCUGgGGUGGCgCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 45333 | 0.7 | 0.446416 |
Target: 5'- aCUGCGugGccUGCGccGCCugggCCGCCGCGUa -3' miRNA: 3'- -GAUGCugCucACGC--UGG----GGUGGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 31743 | 0.7 | 0.446416 |
Target: 5'- cCUGCcGCGAGcgcugGUGuCCCCACCGCc- -3' miRNA: 3'- -GAUGcUGCUCa----CGCuGGGGUGGCGcg -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 28143 | 0.7 | 0.437121 |
Target: 5'- -gGCGAUGAGcUGCccGGCCUCGaCGCGCu -3' miRNA: 3'- gaUGCUGCUC-ACG--CUGGGGUgGCGCG- -5' |
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23383 | 5' | -58.1 | NC_005259.1 | + | 33397 | 0.81 | 0.088223 |
Target: 5'- -cGCGACGAGc-CGugUCCACCGCGCg -3' miRNA: 3'- gaUGCUGCUCacGCugGGGUGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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