Results 41 - 60 of 78 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 31799 | 0.74 | 0.233375 |
Target: 5'- -cGCGucgucauCGAGcucgacCGACCCCACCGCGCc -3' miRNA: 3'- gaUGCu------GCUCac----GCUGGGGUGGCGCG- -5' |
|||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 31248 | 0.75 | 0.200604 |
Target: 5'- -cGCGGCG-GUGCcGCCCCACaCGcCGCa -3' miRNA: 3'- gaUGCUGCuCACGcUGGGGUG-GC-GCG- -5' |
|||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 18959 | 0.76 | 0.185769 |
Target: 5'- -gAgGAUGGG-GUGACCUCGCCGCGUa -3' miRNA: 3'- gaUgCUGCUCaCGCUGGGGUGGCGCG- -5' |
|||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 35216 | 0.77 | 0.154872 |
Target: 5'- -gGCGGCGAGgaacGUGACCgCCACgCGUGCa -3' miRNA: 3'- gaUGCUGCUCa---CGCUGG-GGUG-GCGCG- -5' |
|||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 2261 | 0.79 | 0.122011 |
Target: 5'- -gGCGACGAGUuCGACaUCACCGCGCc -3' miRNA: 3'- gaUGCUGCUCAcGCUGgGGUGGCGCG- -5' |
|||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 48058 | 0.71 | 0.367002 |
Target: 5'- -cACGGCGGGUaGCG---CCGCCGCGCc -3' miRNA: 3'- gaUGCUGCUCA-CGCuggGGUGGCGCG- -5' |
|||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 47950 | 0.71 | 0.367002 |
Target: 5'- -gACGGCG-GUGcCGAUggCCGCCGCGCc -3' miRNA: 3'- gaUGCUGCuCAC-GCUGg-GGUGGCGCG- -5' |
|||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 53687 | 0.69 | 0.469165 |
Target: 5'- -cGCGAUG-GUGCGACCggUcaacgugaacgugguCACCGCGCc -3' miRNA: 3'- gaUGCUGCuCACGCUGG--G---------------GUGGCGCG- -5' |
|||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 21534 | 0.69 | 0.465332 |
Target: 5'- -aGCGGCGAGgacUGcCGACUCagagACCGCGUa -3' miRNA: 3'- gaUGCUGCUC---AC-GCUGGGg---UGGCGCG- -5' |
|||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 43917 | 0.69 | 0.465332 |
Target: 5'- --uCGAUGGGcaGCGACgaCACCGCGCu -3' miRNA: 3'- gauGCUGCUCa-CGCUGggGUGGCGCG- -5' |
|||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 7182 | 0.69 | 0.454876 |
Target: 5'- --cCGGCGAGUGCccGGCCUgcggacgCACCGgGCu -3' miRNA: 3'- gauGCUGCUCACG--CUGGG-------GUGGCgCG- -5' |
|||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 13786 | 0.7 | 0.446416 |
Target: 5'- -gGCGACGAgcagugGUGCGACaUCACCG-GCg -3' miRNA: 3'- gaUGCUGCU------CACGCUGgGGUGGCgCG- -5' |
|||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 45333 | 0.7 | 0.446416 |
Target: 5'- aCUGCGugGccUGCGccGCCugggCCGCCGCGUa -3' miRNA: 3'- -GAUGCugCucACGC--UGG----GGUGGCGCG- -5' |
|||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 31743 | 0.7 | 0.446416 |
Target: 5'- cCUGCcGCGAGcgcugGUGuCCCCACCGCc- -3' miRNA: 3'- -GAUGcUGCUCa----CGCuGGGGUGGCGcg -5' |
|||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 28143 | 0.7 | 0.437121 |
Target: 5'- -gGCGAUGAGcUGCccGGCCUCGaCGCGCu -3' miRNA: 3'- gaUGCUGCUC-ACG--CUGGGGUgGCGCG- -5' |
|||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 35620 | 0.7 | 0.409918 |
Target: 5'- gCUGCGuCGAGUaGUucgGGCCgCCGCCGCuGCc -3' miRNA: 3'- -GAUGCuGCUCA-CG---CUGG-GGUGGCG-CG- -5' |
|||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 60250 | 0.7 | 0.401087 |
Target: 5'- uUGCGuGCGGGUGCaaGGCUggCCACCaGCGCu -3' miRNA: 3'- gAUGC-UGCUCACG--CUGG--GGUGG-CGCG- -5' |
|||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 57861 | 0.71 | 0.383793 |
Target: 5'- -cACGACG-GUGCGACaCCCucgaugugGCgGUGCg -3' miRNA: 3'- gaUGCUGCuCACGCUG-GGG--------UGgCGCG- -5' |
|||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 44873 | 0.71 | 0.383793 |
Target: 5'- -gGCGGCGAGauccgacGCG-CCCCAcgaguauuuuCCGCGCu -3' miRNA: 3'- gaUGCUGCUCa------CGCuGGGGU----------GGCGCG- -5' |
|||||||
23383 | 5' | -58.1 | NC_005259.1 | + | 13338 | 0.71 | 0.383793 |
Target: 5'- -cACGGCGGGacCG-CCCCGCCGCa- -3' miRNA: 3'- gaUGCUGCUCacGCuGGGGUGGCGcg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home