miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23384 3' -57.7 NC_005259.1 + 28653 0.67 0.558495
Target:  5'- cCGC-CGAGGCCGCCgucaaGAUCaUGACGUg -3'
miRNA:   3'- cGCGaGUUCCGGCGG-----CUAGgGUUGCA- -5'
23384 3' -57.7 NC_005259.1 + 7580 0.67 0.558495
Target:  5'- cGCGC-CGccGCCGCCGAcCUCAAgGUc -3'
miRNA:   3'- -CGCGaGUucCGGCGGCUaGGGUUgCA- -5'
23384 3' -57.7 NC_005259.1 + 45344 0.67 0.558495
Target:  5'- uGCGC-CGccuGGGCCGCCGcgUagUCGACGg -3'
miRNA:   3'- -CGCGaGU---UCCGGCGGCuaG--GGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 20825 0.67 0.558495
Target:  5'- gGCGCacCAAGGCUGaCCGugagUCCGACGc -3'
miRNA:   3'- -CGCGa-GUUCCGGC-GGCua--GGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 19361 0.67 0.557449
Target:  5'- aCGCcgggaUCAAGGCCccGCUGAUcaccggcCCCAACGg -3'
miRNA:   3'- cGCG-----AGUUCCGG--CGGCUA-------GGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 35008 0.68 0.548068
Target:  5'- aCGCUgCGAGGCCGgUGAagCCGACu- -3'
miRNA:   3'- cGCGA-GUUCCGGCgGCUagGGUUGca -5'
23384 3' -57.7 NC_005259.1 + 45242 0.68 0.537704
Target:  5'- uUGCUC-AGGUCGCCGGUCaucGCGa -3'
miRNA:   3'- cGCGAGuUCCGGCGGCUAGgguUGCa -5'
23384 3' -57.7 NC_005259.1 + 17802 0.68 0.537704
Target:  5'- cGCGauagCGAGGCCGgUGAgCUCAGCGa -3'
miRNA:   3'- -CGCga--GUUCCGGCgGCUaGGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 44750 0.68 0.507045
Target:  5'- cGCGC-CGAGGCUcuugagcaCCGAUCCCGcaucgGCGg -3'
miRNA:   3'- -CGCGaGUUCCGGc-------GGCUAGGGU-----UGCa -5'
23384 3' -57.7 NC_005259.1 + 28975 0.68 0.496989
Target:  5'- gGUGC-CGAGGCCGCgaGcgCCCGcuACGg -3'
miRNA:   3'- -CGCGaGUUCCGGCGg-CuaGGGU--UGCa -5'
23384 3' -57.7 NC_005259.1 + 43033 0.68 0.496989
Target:  5'- cCGC-CGagcAGGCCGCCGAgcagcgaaCCGACGg -3'
miRNA:   3'- cGCGaGU---UCCGGCGGCUag------GGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 48501 0.69 0.490999
Target:  5'- cGCGCUUgAGGGCCgcgacuugccgcacuGCCGAcuUCUCGGCGc -3'
miRNA:   3'- -CGCGAG-UUCCGG---------------CGGCU--AGGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 60142 0.69 0.487024
Target:  5'- uGCGCggccuuGGCCGCCGc-CUCAGCGg -3'
miRNA:   3'- -CGCGaguu--CCGGCGGCuaGGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 42947 0.69 0.457719
Target:  5'- cGUGggCGAGGCCGCCGuugUCgAACGg -3'
miRNA:   3'- -CGCgaGUUCCGGCGGCua-GGgUUGCa -5'
23384 3' -57.7 NC_005259.1 + 66012 0.69 0.457719
Target:  5'- uGCGCacccUCGGGGCCGCacguguugcgcgCGAgCUCGACGUa -3'
miRNA:   3'- -CGCG----AGUUCCGGCG------------GCUaGGGUUGCA- -5'
23384 3' -57.7 NC_005259.1 + 14748 0.69 0.457719
Target:  5'- cGCGCUgGccGGGCCGgUGAUCCugcaCAACGc -3'
miRNA:   3'- -CGCGAgU--UCCGGCgGCUAGG----GUUGCa -5'
23384 3' -57.7 NC_005259.1 + 67891 0.69 0.448162
Target:  5'- cGCGCaUCGuucGGCUGUgGGUCUCGGCGa -3'
miRNA:   3'- -CGCG-AGUu--CCGGCGgCUAGGGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 874 0.7 0.438716
Target:  5'- uGCGCUCAacgcaAGGaUCGauGAUCCCAACa- -3'
miRNA:   3'- -CGCGAGU-----UCC-GGCggCUAGGGUUGca -5'
23384 3' -57.7 NC_005259.1 + 19863 0.7 0.438716
Target:  5'- gGCGCUCGcGcCCGCCGGgaUCgCCGACGc -3'
miRNA:   3'- -CGCGAGUuCcGGCGGCU--AG-GGUUGCa -5'
23384 3' -57.7 NC_005259.1 + 35276 0.7 0.429384
Target:  5'- cGCGC-CGGGGUCGCCGAUgugCCCcuUGa -3'
miRNA:   3'- -CGCGaGUUCCGGCGGCUA---GGGuuGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.