miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23384 5' -52 NC_005259.1 + 53460 0.66 0.921632
Target:  5'- aCGGCGGCUGGCucguCGuCCGGcCCg-- -3'
miRNA:   3'- -GCUGCUGACCGuau-GU-GGCUaGGaac -5'
23384 5' -52 NC_005259.1 + 26931 0.66 0.915504
Target:  5'- uCGugGAuCUcGGCAUACGCCGcUgCUg- -3'
miRNA:   3'- -GCugCU-GA-CCGUAUGUGGCuAgGAac -5'
23384 5' -52 NC_005259.1 + 46750 0.66 0.915504
Target:  5'- gCGAUGGCUGcGCcgACACCuGcgCCg-- -3'
miRNA:   3'- -GCUGCUGAC-CGuaUGUGG-CuaGGaac -5'
23384 5' -52 NC_005259.1 + 26637 0.66 0.909099
Target:  5'- uCGAUGGcCUGGCGUGCGCUcggcaGGUUCg-- -3'
miRNA:   3'- -GCUGCU-GACCGUAUGUGG-----CUAGGaac -5'
23384 5' -52 NC_005259.1 + 58768 0.66 0.909099
Target:  5'- aCGACGcuGCgGGCgcuGUGCGCCGGUCg--- -3'
miRNA:   3'- -GCUGC--UGaCCG---UAUGUGGCUAGgaac -5'
23384 5' -52 NC_005259.1 + 23662 0.66 0.90242
Target:  5'- gCGACGGCUGGac--CGCCGAcCCc-- -3'
miRNA:   3'- -GCUGCUGACCguauGUGGCUaGGaac -5'
23384 5' -52 NC_005259.1 + 35993 0.66 0.90242
Target:  5'- cCGACGGCgaGGCcggacUGCACCGAgguggCCa-- -3'
miRNA:   3'- -GCUGCUGa-CCGu----AUGUGGCUa----GGaac -5'
23384 5' -52 NC_005259.1 + 30263 0.67 0.88077
Target:  5'- --uCGACUGaCAUGCACCGggCCa-- -3'
miRNA:   3'- gcuGCUGACcGUAUGUGGCuaGGaac -5'
23384 5' -52 NC_005259.1 + 67045 0.67 0.873031
Target:  5'- uCGACGGCgagcaccCGUGCGCCGAUCUc-- -3'
miRNA:   3'- -GCUGCUGacc----GUAUGUGGCUAGGaac -5'
23384 5' -52 NC_005259.1 + 40940 0.67 0.865042
Target:  5'- -uGCGGCUgaGGUAUGCAgagUGAUCCUUGg -3'
miRNA:   3'- gcUGCUGA--CCGUAUGUg--GCUAGGAAC- -5'
23384 5' -52 NC_005259.1 + 42066 0.67 0.865042
Target:  5'- gGGCGGCUaGGUAUcgcaGCACCGAgucggUCCg-- -3'
miRNA:   3'- gCUGCUGA-CCGUA----UGUGGCU-----AGGaac -5'
23384 5' -52 NC_005259.1 + 46436 0.67 0.864229
Target:  5'- uGACGAUggUGGCAagcUGCugCucggugaggcucaGAUCCUUGa -3'
miRNA:   3'- gCUGCUG--ACCGU---AUGugG-------------CUAGGAAC- -5'
23384 5' -52 NC_005259.1 + 11977 0.72 0.611593
Target:  5'- cCGGCGACUGGUAUcgcugcaccagcACAUCGAUagagucgguggCCUUGu -3'
miRNA:   3'- -GCUGCUGACCGUA------------UGUGGCUA-----------GGAAC- -5'
23384 5' -52 NC_005259.1 + 51035 0.73 0.55688
Target:  5'- aCGAgCGGCgGGCAcGCGCC-AUCCUUGa -3'
miRNA:   3'- -GCU-GCUGaCCGUaUGUGGcUAGGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.