miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23387 3' -59 NC_005259.1 + 40000 0.66 0.613115
Target:  5'- gAUCGCCGCCgagcaugagggucugAccgggacgugaUGCUuugagguCGCCGGUGAUCg -3'
miRNA:   3'- gUAGCGGCGG---------------U-----------ACGG-------GCGGCUACUGG- -5'
23387 3' -59 NC_005259.1 + 43030 0.66 0.609959
Target:  5'- --aUGCCGCCGaGCaggCCGCCGAgcagcGAaCCg -3'
miRNA:   3'- guaGCGGCGGUaCG---GGCGGCUa----CU-GG- -5'
23387 3' -59 NC_005259.1 + 22611 0.66 0.609959
Target:  5'- --aCGCCGCCGa--CCGCCGcccGAUCa -3'
miRNA:   3'- guaGCGGCGGUacgGGCGGCua-CUGG- -5'
23387 3' -59 NC_005259.1 + 9293 0.66 0.609959
Target:  5'- --gUGCCGCCAcGCUCgucccguaGCCGAUGgaucucACCg -3'
miRNA:   3'- guaGCGGCGGUaCGGG--------CGGCUAC------UGG- -5'
23387 3' -59 NC_005259.1 + 58188 0.66 0.609959
Target:  5'- aCGUCuugaCCGCCGUggGCuuGCCGGugucagggucagUGGCCu -3'
miRNA:   3'- -GUAGc---GGCGGUA--CGggCGGCU------------ACUGG- -5'
23387 3' -59 NC_005259.1 + 27855 0.66 0.609959
Target:  5'- gGUCGCgCGCCGUacgaCCGCCcucuugGGUGugCa -3'
miRNA:   3'- gUAGCG-GCGGUAcg--GGCGG------CUACugG- -5'
23387 3' -59 NC_005259.1 + 412 0.66 0.59945
Target:  5'- ---aGCaGCgCGUGCCCGUCGAggaUGACg -3'
miRNA:   3'- guagCGgCG-GUACGGGCGGCU---ACUGg -5'
23387 3' -59 NC_005259.1 + 37291 0.66 0.59945
Target:  5'- -cUUGCaugGCgGUGCCCGCCGGgucagcaGACa -3'
miRNA:   3'- guAGCGg--CGgUACGGGCGGCUa------CUGg -5'
23387 3' -59 NC_005259.1 + 38980 0.66 0.59945
Target:  5'- nCAUCGCgGauaCCcUGCCCagccucguugaGCgCGGUGACCa -3'
miRNA:   3'- -GUAGCGgC---GGuACGGG-----------CG-GCUACUGG- -5'
23387 3' -59 NC_005259.1 + 35067 0.66 0.59945
Target:  5'- --aCGCCGCCcuUGCUga-CGGUGGCCu -3'
miRNA:   3'- guaGCGGCGGu-ACGGgcgGCUACUGG- -5'
23387 3' -59 NC_005259.1 + 15539 0.66 0.59945
Target:  5'- ---gGCCGCCGUcaCUgGCCGGUG-CCa -3'
miRNA:   3'- guagCGGCGGUAc-GGgCGGCUACuGG- -5'
23387 3' -59 NC_005259.1 + 18501 0.66 0.59945
Target:  5'- --aCGCCGaCGaccucagcgaucUGCCCGCCGAUuucGGCa -3'
miRNA:   3'- guaGCGGCgGU------------ACGGGCGGCUA---CUGg -5'
23387 3' -59 NC_005259.1 + 26021 0.66 0.588967
Target:  5'- gAUgGCCgcaagcggguugGCCAgcaGCgCCGCCGGguUGGCCa -3'
miRNA:   3'- gUAgCGG------------CGGUa--CG-GGCGGCU--ACUGG- -5'
23387 3' -59 NC_005259.1 + 26507 0.66 0.588967
Target:  5'- -cUCGCCGCCcgGCgagaagaGCgCGGUGAgCa -3'
miRNA:   3'- guAGCGGCGGuaCGgg-----CG-GCUACUgG- -5'
23387 3' -59 NC_005259.1 + 19835 0.66 0.585828
Target:  5'- uCAUCGCgGCUGcUGCCgCGCuCGGUGuggcgcucgcgcccGCCg -3'
miRNA:   3'- -GUAGCGgCGGU-ACGG-GCG-GCUAC--------------UGG- -5'
23387 3' -59 NC_005259.1 + 37476 0.66 0.584783
Target:  5'- --aCGCCGCCGUuggcugacccaccCCCGgCGGUGAgCa -3'
miRNA:   3'- guaGCGGCGGUAc------------GGGCgGCUACUgG- -5'
23387 3' -59 NC_005259.1 + 18462 0.66 0.578517
Target:  5'- aCAcCGCCgguccugaGCCGUGCCCgacGCCGAcGAgCu -3'
miRNA:   3'- -GUaGCGG--------CGGUACGGG---CGGCUaCUgG- -5'
23387 3' -59 NC_005259.1 + 27276 0.66 0.578517
Target:  5'- --aCGCCGCCuUGagCCGCCGcUGcacgcGCCg -3'
miRNA:   3'- guaGCGGCGGuACg-GGCGGCuAC-----UGG- -5'
23387 3' -59 NC_005259.1 + 3050 0.66 0.578517
Target:  5'- gAUCGCCGaCUAcuaCCGUCGAcgGGCCg -3'
miRNA:   3'- gUAGCGGC-GGUacgGGCGGCUa-CUGG- -5'
23387 3' -59 NC_005259.1 + 49083 0.66 0.577474
Target:  5'- gAUCGCUcgaggguGUCAUggccGCCCGCCGG-GAUCu -3'
miRNA:   3'- gUAGCGG-------CGGUA----CGGGCGGCUaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.